Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14602 Trifolium pratense HOM05D000141 ORTHO05D004993 4.7e-46 187.6 100 100.0
TPR.G36254 Trifolium pratense HOM05D000141 ORTHO05D004993 4.7e-46 187.6 100 100.0
Ca_22599_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004993 1.4e-45 186.0 100 99.0
Medtr8g471180 Medicago truncatula HOM05D000141 ORTHO05D004993 4.0e-45 184.5 100 98.0
Lj4g0027101 Lotus japonicus HOM05D000141 ORTHO05D004993 8.9e-45 183.3 100 97.0
Eucgr.I00545 Eucalyptus grandis HOM05D000141 ORTHO05D004993 1.5e-44 182.6 100 96.0
Manes.12G126900 Manihot esculenta HOM05D000141 ORTHO05D004993 5.8e-44 180.6 100 96.0
arahy.Tifrunner.gnm1.ann1.029WE6 Arachis hypogaea HOM05D000141 ORTHO05D004993 9.9e-44 179.9 100 96.0
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 1.3e-43 179.5 99 96.0
ClCG01G018390 Citrullus lanatus HOM05D000141 ORTHO05D004993 2.2e-43 178.7 100 94.0
Phvul.003G289200 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 2.2e-43 178.7 100 95.0
TWI77G1015 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 2.2e-43 178.7 100 95.0
arahy.Tifrunner.gnm1.ann1.46GERB Arachis hypogaea HOM05D000141 ORTHO05D004993 2.9e-43 178.3 100 95.0
Sabra07G0008100 Salix brachista HOM05D000141 ORTHO05D004993 2.9e-43 178.3 100 95.0
Atru.chr3.1257 Acer truncatum HOM05D000141 ORTHO05D004993 3.7e-43 177.9 100 95.0
Glyma.18G146600 Glycine max HOM05D000141 ORTHO05D004993 4.9e-43 177.6 100 94.0
Glyma.08G279800 Glycine max HOM05D000141 ORTHO05D004993 6.4e-43 177.2 100 94.0
Gohir.A11G206600 Gossypium hirsutum HOM05D000141 ORTHO05D004993 6.4e-43 177.2 100 94.0
Gorai.007G233100 Gossypium raimondii HOM05D000141 ORTHO05D004993 6.4e-43 177.2 100 94.0
CiPaw.07G048100 Carya illinoinensis HOM05D000141 ORTHO05D004993 1.1e-42 176.4 99 94.9
MELO3C007717.2 Cucumis melo HOM05D000141 ORTHO05D004993 1.1e-42 176.4 100 93.0
Gohir.D11G217000 Gossypium hirsutum HOM05D000141 ORTHO05D004993 1.4e-42 176.0 100 93.0
Sed0001145 Sechium edule HOM05D000141 ORTHO05D004993 1.9e-42 175.6 100 93.0
VMungo0251G3517 Vigna mungo HOM05D000141 ORTHO05D004993 1.9e-42 175.6 100 93.0
Duzib147G0545 Durio zibethinus HOM05D000141 ORTHO05D004993 2.4e-42 175.3 100 93.0
Thecc.01G091400 Theobroma cacao HOM05D000141 ORTHO05D004993 2.4e-42 175.3 100 93.0
CsaV3_6G045040 Cucumis sativus L. HOM05D000141 ORTHO05D004993 3.2e-42 174.9 100 92.0
Potri.007G010700 Populus trichocarpa HOM05D000141 ORTHO05D004993 3.2e-42 174.9 100 93.0
Lalb_Chr05g0228501 Lupinus albus HOM05D000141 ORTHO05D004993 4.1e-42 174.5 100 93.0
Cpa.g.sc55.32 Carica papaya HOM05D000141 ORTHO05D004993 7.1e-42 173.7 100 92.0
Cfa006890 Carpinus fangiana HOM05D000141 ORTHO05D004993 7.1e-42 173.7 100 94.0
Haze_03862 Corylus avellana HOM05D000141 ORTHO05D004993 7.1e-42 173.7 100 94.0
Glyma.02G041400 Glycine max HOM05D000141 ORTHO05D004993 7.1e-42 173.7 100 93.0
MD00G1019700 Malus domestica HOM05D000141 ORTHO05D004993 7.1e-42 173.7 99 93.9
Phvul.002G147700 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 7.1e-42 173.7 100 93.0
Prupe.6G198800 Prunus persica HOM05D000141 ORTHO05D004993 7.1e-42 173.7 99 93.9
TWI74G0717 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 9.2e-42 173.3 100 92.0
VMungo1215G2324 Vigna mungo HOM05D000141 ORTHO05D004993 9.2e-42 173.3 100 93.0
arahy.Tifrunner.gnm1.ann1.52WN7P Arachis hypogaea HOM05D000141 ORTHO05D004993 1.2e-41 172.9 100 91.0
arahy.Tifrunner.gnm1.ann1.5SKZ26 Arachis hypogaea HOM05D000141 ORTHO05D004993 1.2e-41 172.9 100 91.0
CANSAT54G0158 Cannabis sativa HOM05D000141 ORTHO05D004993 6.0e-41 170.6 99 92.9
COL.COLO4_27349 Corchorus olitorius HOM05D000141 ORTHO05D004993 6.0e-41 170.6 100 90.0
FvH4_1g19720 Fragaria vesca HOM05D000141 ORTHO05D004993 7.8e-41 170.2 98 93.9
FAN19G2112 Fragaria x ananassa HOM05D000141 ORTHO05D004993 7.8e-41 170.2 98 93.9
FAN26G1575 Fragaria x ananassa HOM05D000141 ORTHO05D004993 7.8e-41 170.2 98 93.9
FAN23G0308 Fragaria x ananassa HOM05D000404 ORTHO05D004993 1.0e-40 169.9 98 93.9
FAN23G1526 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.0e-40 169.9 98 93.9
FAN28G0107 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.0e-40 169.9 98 93.9
RcHm_v2.0_Chr2g0111301 Rosa chinensis HOM05D000141 ORTHO05D004993 1.0e-40 169.9 100 92.0
Eucgr.I00476 Eucalyptus grandis HOM05D000141 ORTHO05D004993 1.3e-40 169.5 100 90.0
AL6G20990 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 1.7e-40 169.1 100 88.0
Ciclev10024724m.g Citrus clementina HOM05D000141 ORTHO05D004993 1.7e-40 169.1 100 90.0
GSVIVG01005935001 Vitis vinifera HOM05D000141 ORTHO05D004993 1.7e-40 169.1 108 87.0
CSS0023880 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 2.3e-40 168.7 107 88.8
AT5G10470 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 3.9e-40 167.9 100 87.0
Lj2C535G3 Lonicera japonica HOM05D000141 ORTHO05D004993 3.9e-40 167.9 108 87.0
Hund14088 Selenicereus undatus HOM05D000141 ORTHO05D004993 5.1e-40 167.5 96 92.7
Glyma.01G023600 Glycine max HOM05D000141 ORTHO05D004993 6.6e-40 167.2 100 91.0
ATR0665G420 Amborella trichopoda HOM05D000141 ORTHO05D004993 8.6e-40 166.8 96 92.7
Carub.0006s0895 Capsella rubella HOM05D000141 ORTHO05D004993 1.1e-39 166.4 100 87.0
MD15G1313400 Malus domestica HOM05D000141 ORTHO05D004993 1.1e-39 166.4 99 90.9
Actinidia25312 Actinidia chinensis HOM05D000141 ORTHO05D004993 1.5e-39 166.0 96 93.8
Thhalv10012459m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 1.5e-39 166.0 100 88.0
Nitab4.5_0001468g0110 Nicotiana tabacum HOM05D000141 ORTHO05D004993 1.5e-39 166.0 96 91.7
Nitab4.5_0004153g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004993 1.5e-39 166.0 96 91.7
MBI02_g32604_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004993 1.9e-39 165.6 96 92.7
Lalb_Chr05g0216301 Lupinus albus HOM05D000141 ORTHO05D004993 4.3e-39 164.5 100 91.0
Psat4g119320 Pisum sativum HOM05D000141 ORTHO05D004993 4.3e-39 164.5 101 88.1
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 7.3e-39 163.7 96 90.6
Aa31LG3G16690 Aethionema arabicum HOM05D000141 ORTHO05D004993 9.5e-39 163.3 100 87.0
Migut.K00793 Erythranthe guttata HOM05D000141 ORTHO05D004993 1.2e-38 162.9 96 90.6
TAR628G0162 Trochodendron aralioides HOM05D000141 ORTHO05D004993 1.2e-38 162.9 96 91.7
SGA_v2.0_scaffold45G17236 Striga asiatica HOM05D000141 ORTHO05D004993 1.6e-38 162.5 96 89.6
Rhsim10G0172400 Rhododendron simsii HOM05D000141 ORTHO05D004993 2.8e-38 161.8 96 90.6
Sp6g32970 Schrenkiella parvula HOM05D000141 ORTHO05D004993 2.8e-38 161.8 100 87.0
EL10Ac6g15211 Beta vulgaris HOM05D000141 ORTHO05D004993 3.6e-38 161.4 96 90.6
Carub.0008s2631 Capsella rubella HOM05D000141 ORTHO05D004993 3.6e-38 161.4 100 88.0
Aqoxy6G01438 Aquilegia oxysepala HOM05D000141 ORTHO05D004993 4.7e-38 161.0 96 89.6
CARHR202820 Cardamine hirsuta HOM05D000141 ORTHO05D004993 4.7e-38 161.0 100 85.0
THA.LOC104801691 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 4.7e-38 161.0 99 89.9
vmacro13004 Vaccinium macrocarpon HOM05D000141 ORTHO05D004993 6.2e-38 160.6 96 91.7
AL8G43040 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 8.1e-38 160.2 100 87.0
AT5G65460 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 8.1e-38 160.2 100 87.0
BcaB01g06283 Brassica carinata HOM05D000141 ORTHO05D004993 8.1e-38 160.2 100 85.0
Ah.03g140120 Amaranthus hybridus HOM05D000141 ORTHO05D004993 1.1e-37 159.8 96 89.6
Zm00001eb372980 Zea mays HOM05D000141 ORTHO05D004993 1.1e-37 159.8 96 88.5
Thhalv10003525m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 1.4e-37 159.5 100 87.0
BcaB01g05532 Brassica carinata HOM05D000141 ORTHO05D004993 1.8e-37 159.1 100 84.0
C03p05120 Brassica napus HOM05D000141 ORTHO05D004993 1.8e-37 159.1 100 84.0
BraA03t09798Z Brassica rapa HOM05D000141 ORTHO05D004993 1.8e-37 159.1 100 84.0
CAN.G1344.1 Capsicum annuum HOM05D000141 ORTHO05D004993 1.8e-37 159.1 96 89.6
HPP92_005965 Vanilla planifolia HOM05D000141 ORTHO05D004993 2.4e-37 158.7 96 86.5
PGR031G3531 Punica granatum HOM05D000141 ORTHO05D004993 3.1e-37 158.3 100 87.0
Sp2g28540 Schrenkiella parvula HOM05D000141 ORTHO05D004993 3.1e-37 158.3 100 86.0
A03p04560 Brassica napus HOM05D000141 ORTHO05D004993 4.0e-37 157.9 100 83.0
CARHR279440 Cardamine hirsuta HOM05D000141 ORTHO05D004993 4.0e-37 157.9 100 87.0
CDE10G0963 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 4.0e-37 157.9 94 88.3
PSO675G5554 Papaver somniferum HOM05D000141 ORTHO05D004993 4.0e-37 157.9 96 91.7
A06p32290 Brassica napus HOM05D000141 ORTHO05D004993 5.2e-37 157.5 100 86.0
C03p60620 Brassica napus HOM05D000141 ORTHO05D004993 5.2e-37 157.5 100 86.0
BraA06t26155Z Brassica rapa HOM05D000141 ORTHO05D004993 5.2e-37 157.5 100 86.0
Solyc11g010560.3 Solanum lycopersicum HOM05D000141 ORTHO05D004993 5.2e-37 157.5 97 89.7
Sopen11g005360 Solanum pennellii HOM05D000141 ORTHO05D004993 5.2e-37 157.5 97 89.7
BolC3t18317H Brassica oleracea HOM05D000141 ORTHO05D004993 6.8e-37 157.1 100 86.0
Aa31LG1G16550 Aethionema arabicum HOM05D000141 ORTHO05D004993 1.5e-36 156.0 101 85.1
AUR62003657 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.5e-36 156.0 93 90.3
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 2.6e-36 155.2 96 87.5
MSTRG.15690 Avicennia marina HOM05D000141 ORTHO05D004993 4.4e-36 154.5 96 86.5
AUR62017965 Chenopodium quinoa HOM05D000141 ORTHO05D004993 5.8e-36 154.1 93 89.2
Peaxi162Scf00778g00009 Petunia axillaris HOM05D000141 ORTHO05D004993 1.7e-35 152.5 96 88.5
unitig_0.g1718 Utricularia gibba HOM05D000141 ORTHO05D004993 2.2e-35 152.1 93 88.2
unitig_748.g7037 Utricularia gibba HOM05D000141 ORTHO05D004993 2.9e-35 151.8 93 88.2
CDE10G0717 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 8.4e-35 150.2 94 85.1
Lsat_1_v5_gn_3_61481 Lactuca sativa HOM05D000141 ORTHO05D004993 8.4e-35 150.2 96 86.5
SalBow5G1291 Salvia bowleyana HOM05D000141 ORTHO05D004993 1.1e-34 149.8 90 87.8
THA.LOC104819293 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 4.2e-34 147.9 99 83.8
DCAR_016619 Daucus carota HOM05D000141 ORTHO05D004993 7.1e-34 147.1 96 81.2
Psat6g213040 Pisum sativum HOM05D000141 ORTHO05D004993 2.1e-33 145.6 84 92.9
Dinv36920 Davidia involucrata HOM05D000141 ORTHO05D004993 3.5e-33 144.8 84 92.9
TAR376G1001 Trochodendron aralioides HOM05D000141 ORTHO05D004993 6.0e-33 144.1 96 83.3
PSO541G3987 Papaver somniferum HOM05D000141 ORTHO05D004993 1.7e-32 142.5 96 85.4
DCAR_003449 Daucus carota HOM05D000141 ORTHO05D004993 2.5e-31 138.7 84 88.1
SMO169G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 4.3e-31 137.9 94 78.7
CSS0021935 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 9.6e-31 136.7 107 76.6
HanXRQChr13g0405071 Helianthus annuus HOM05D000141 ORTHO05D004993 4.8e-30 134.4 84 90.5
AagrBONN_evm.TU.Sc2ySwM_228.4409 Anthoceros agrestis HOM05D000141 ORTHO05D004993 5.3e-29 131.0 96 77.1
SEGI_00023 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 9.0e-29 130.2 83 85.5
SMO337G0058 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 1.2e-28 129.8 94 73.4
Mapoly0022s0156 Marchantia polymorpha HOM05D000141 ORTHO05D004993 2.2e-27 125.6 96 72.9
Pp3c3_10920 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.2e-25 119.8 98 70.4
Pp3c3_10921 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.2e-25 119.8 98 70.4
Pp3c4_24010 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.1e-23 113.2 78 79.5
Psat0ss29278g0040 Pisum sativum HOM05D000141 ORTHO05D004993 1.5e-23 112.8 65 93.8
Psat0ss29278g0080 Pisum sativum HOM05D000141 ORTHO05D004993 1.5e-23 112.8 65 93.8
Dinv13609 Davidia involucrata HOM05D000141 ORTHO05D004993 6.2e-22 107.5 84 76.2
Eucgr.J00708 Eucalyptus grandis HOM05D000329 ORTHO05D045324 9.0e-21 103.6 60 95.0
CBR_g78819 Chara braunii HOM05D000141 ORTHO05D004993 4.5e-20 101.3 85 63.5
Eucgr.J00931 Eucalyptus grandis HOM05D000329 ORTHO05D045324 4.9e-19 97.8 60 91.7
CBR_g8597 Chara braunii HOM05D000141 ORTHO05D004993 1.9e-15 85.9 88 53.4
Psat0s1531g0080 Pisum sativum HOM05D000141 ORTHO05D017607 7.4e-15 84.0 43 93.0
SHI12213 Sapria himalayana HOM05D000141 ORTHO05D004993 1.3e-08 63.2 62 56.5


User provided reference genes

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