Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36217 Trifolium pratense HOM05D000100 ORTHO05D410886 4.2e-33 144.1 70 100.0
TPR.G39983 Trifolium pratense HOM05D000100 ORTHO05D004702 4.6e-32 140.6 70 97.1
Medtr4g082820 Medicago truncatula HOM05D000100 ORTHO05D004702 4.5e-27 124.0 68 82.4
Psat7g154280 Pisum sativum HOM05D000100 ORTHO05D004702 3.8e-26 120.9 68 82.4
Ca_18817_v3 Cicer arietinum L. HOM05D000100 ORTHO05D004702 6.7e-23 110.2 65 78.5
Lj2g0007579 Lotus japonicus HOM05D000100 ORTHO05D004702 6.5e-18 93.6 69 59.4
Lalb_Chr17g0341021 Lupinus albus HOM05D000100 ORTHO05D004702 3.2e-17 91.3 62 66.1
Phvul.004G137900 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 4.4e-14 80.9 62 59.7
Phvul.004G138200 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 5.7e-14 80.5 62 58.1
Phvul.004G138400 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 5.7e-14 80.5 62 58.1
VMungo0464G0240 Vigna mungo HOM05D000100 ORTHO05D004702 9.7e-14 79.7 62 56.5
Psat2g128120 Pisum sativum HOM05D000100 ORTHO05D004702 1.3e-13 79.3 67 56.7
VMungo0464G1323 Vigna mungo HOM05D000100 ORTHO05D004702 1.3e-13 79.3 62 54.8
Glyma.09G162400 Glycine max HOM05D000100 ORTHO05D004702 3.7e-13 77.8 64 56.2
Sed0019811 Sechium edule HOM05D000100 ORTHO05D004702 1.8e-12 75.5 61 52.5
Atru.chr11.1687 Acer truncatum HOM05D000100 ORTHO05D004702 2.4e-12 75.1 69 53.6
VMungo0464G0024 Vigna mungo HOM05D000100 ORTHO05D004702 7.0e-12 73.6 64 48.4
Duzib268G1512 Durio zibethinus HOM05D000100 ORTHO05D004702 2.6e-11 71.6 62 48.4
TWI75G1492 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 2.6e-11 71.6 64 46.9
arahy.Tifrunner.gnm1.ann1.5S4EZI Arachis hypogaea HOM05D000100 ORTHO05D004702 3.5e-11 71.2 58 55.2
Glyma.16G212000 Glycine max HOM05D000100 ORTHO05D004702 4.5e-11 70.9 64 51.6
Lj2g0020882 Lotus japonicus HOM05D000100 ORTHO05D004702 5.9e-11 70.5 62 51.6
Medtr6g078320 Medicago truncatula HOM05D000100 ORTHO05D004702 7.7e-11 70.1 69 46.4
Thecc.02G336200 Theobroma cacao HOM05D000100 ORTHO05D004702 1.0e-10 69.7 62 50.0
TWI75G0577 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 1.0e-10 69.7 64 46.9
COL.COLO4_27929 Corchorus olitorius HOM05D000100 ORTHO05D004702 1.3e-10 69.3 61 50.8
COL.COLO4_27928 Corchorus olitorius HOM05D000100 ORTHO05D004702 1.7e-10 68.9 62 46.8
Cfa008906 Carpinus fangiana HOM05D000100 ORTHO05D004702 2.2e-10 68.6 69 44.9
Sed0003026 Sechium edule HOM05D000100 ORTHO05D004702 3.8e-10 67.8 61 49.2
Ciclev10013670m.g Citrus clementina HOM05D000100 ORTHO05D004702 5.0e-10 67.4 63 42.9
Ciclev10031419m.g Citrus clementina HOM05D000100 ORTHO05D004702 8.5e-10 66.6 66 47.0
Potri.017G089000 Populus trichocarpa HOM05D000100 ORTHO05D004702 1.1e-09 66.2 63 44.4
Sabra17G0078700 Salix brachista HOM05D000100 ORTHO05D004702 1.1e-09 66.2 61 44.3
ClCG05G023870 Citrullus lanatus HOM05D000100 ORTHO05D004702 1.9e-09 65.5 61 45.9
MELO3C012135.2 Cucumis melo HOM05D000100 ORTHO05D004702 1.9e-09 65.5 61 45.9
CsaV3_5G033150 Cucumis sativus L. HOM05D000100 ORTHO05D004702 2.5e-09 65.1 61 45.9
DCAR_025404 Daucus carota HOM05D000100 ORTHO05D004702 3.2e-09 64.7 62 41.9
Cfa008904 Carpinus fangiana HOM05D000100 ORTHO05D004702 4.2e-09 64.3 69 40.6
CiPaw.06G090300 Carya illinoinensis HOM05D000100 ORTHO05D004702 7.2e-09 63.5 61 45.9
Dinv33803 Davidia involucrata HOM05D000100 ORTHO05D004702 7.2e-09 63.5 62 48.4
Thecc.02G336100 Theobroma cacao HOM05D000100 ORTHO05D004702 9.4e-09 63.2 61 44.3
Atru.chr2.3147 Acer truncatum HOM05D000100 ORTHO05D004702 2.1e-08 62.0 65 41.5
CiPaw.06G090200 Carya illinoinensis HOM05D000100 ORTHO05D004702 2.7e-08 61.6 65 44.6
Dinv11491 Davidia involucrata HOM05D000100 ORTHO05D004702 3.6e-08 61.2 70 42.9
Sabra04G0066800 Salix brachista HOM05D000100 ORTHO05D004702 3.6e-08 61.2 62 45.2
Sabra04G0066700 Salix brachista HOM05D000100 ORTHO05D004702 4.7e-08 60.8 61 45.9
Cc03_g14830 Coffea canephora HOM05D000100 ORTHO05D004702 8.0e-08 60.1 58 43.1
Rhsim10G0047000 Rhododendron simsii HOM05D000100 ORTHO05D004702 8.0e-08 60.1 65 41.5
PSO528G0286 Papaver somniferum HOM05D000100 ORTHO05D004702 1.0e-07 59.7 59 52.5
Prupe.1G282300 Prunus persica HOM05D000100 ORTHO05D004702 1.0e-07 59.7 68 42.6
Thecc.02G335900 Theobroma cacao HOM05D000100 ORTHO05D004702 1.0e-07 59.7 61 41.0
CSS0016013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.4e-07 59.3 59 45.8
Hma1.2p1_1813F.1_g303870 Hydrangea macrophylla HOM05D000100 ORTHO05D004702 1.4e-07 59.3 51 49.0
Potri.004G126000 Populus trichocarpa HOM05D000100 ORTHO05D004702 1.4e-07 59.3 61 44.3
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 1.8e-07 58.9 48 56.2
Manes.02G050500 Manihot esculenta HOM05D000100 ORTHO05D004702 1.8e-07 58.9 63 39.7
CSS0031209 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.3e-07 58.5 63 44.4
Nitab4.5_0008573g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 2.3e-07 58.5 58 43.1
Rhsim08G0073000 Rhododendron simsii HOM05D000100 ORTHO05D004702 3.0e-07 58.2 63 41.3
Rhsim10G0034200 Rhododendron simsii HOM05D000100 ORTHO05D004702 3.0e-07 58.2 63 38.1
Nitab4.5_0000565g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 4.0e-07 57.8 58 44.8
Aqoxy3G03555 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 5.2e-07 57.4 53 50.9
CSS0024320 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 6.7e-07 57.0 43 55.8
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 1.2e-06 56.2 56 42.9
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.0e-06 55.5 62 41.9
Nn2g12291 Nelumbo nucifera HOM05D000100 ORTHO05D004702 2.0e-06 55.5 62 41.9
Aqoxy3G03556 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 2.6e-06 55.1 56 42.9
DCAR_021666 Daucus carota HOM05D000100 ORTHO05D004702 2.6e-06 55.1 58 37.9
Gohir.A13G080100 Gossypium hirsutum HOM05D000100 ORTHO05D004702 2.6e-06 55.1 57 42.1
MD17G1055500 Malus domestica HOM05D000100 ORTHO05D004702 2.6e-06 55.1 64 37.5
Nn4g23330 Nelumbo nucifera HOM05D000100 ORTHO05D004702 2.6e-06 55.1 57 43.9
Sopen02g033250 Solanum pennellii HOM05D000100 ORTHO05D004702 2.6e-06 55.1 69 42.0
CANSAT64G1162 Cannabis sativa HOM05D000100 ORTHO05D004702 3.3e-06 54.7 63 39.7
Gohir.D13G079900 Gossypium hirsutum HOM05D000100 ORTHO05D004702 3.3e-06 54.7 62 38.7
Gohir.D04G045500 Gossypium hirsutum HOM05D000100 ORTHO05D004702 4.4e-06 54.3 67 41.8
Gorai.012G050700 Gossypium raimondii HOM05D000100 ORTHO05D004702 4.4e-06 54.3 67 41.8
CSS0029818 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 5.7e-06 53.9 58 39.7
Prupe.3G260200 Prunus persica HOM05D000100 ORTHO05D004702 5.7e-06 53.9 64 37.5
SalBow1G3072 Salvia bowleyana HOM05D000100 ORTHO05D004702 5.7e-06 53.9 66 34.8
Gohir.A05G369800 Gossypium hirsutum HOM05D000100 ORTHO05D004702 7.5e-06 53.5 67 41.8
PGSC0003DMG400038989 Solanum tuberosum HOM05D000100 ORTHO05D004702 7.5e-06 53.5 58 37.9


User provided reference genes

Program Settings