Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36198 Trifolium pratense HOM05D002352 ORTHO05D003724 1.0e-19 99.0 47 100.0
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 4.1e-16 87.0 46 93.5
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.1e-13 79.0 45 86.7
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.1e-13 79.0 45 86.7
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-13 79.0 45 86.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.2e-13 77.4 45 84.4
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 3.2e-13 77.4 45 84.4
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 4.2e-13 77.0 45 84.4
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 4.2e-13 77.0 45 84.4
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.2e-13 77.0 45 84.4
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 7.2e-13 76.3 45 82.2
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 9.4e-13 75.9 45 82.2
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 9.4e-13 75.9 45 82.2
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 9.4e-13 75.9 45 82.2
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 9.4e-13 75.9 45 82.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 9.4e-13 75.9 45 84.4
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.2e-12 75.5 45 82.2
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.2e-12 75.5 45 82.2
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.1e-12 74.7 45 80.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 2.1e-12 74.7 45 82.2
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.7e-12 74.3 45 80.0
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.7e-12 74.3 45 82.2
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 2.7e-12 74.3 45 80.0
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 2.7e-12 74.3 45 80.0
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.7e-12 74.3 45 80.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 82.2
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 3.6e-12 73.9 45 80.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 4.7e-12 73.6 45 80.0
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.7e-12 73.6 45 77.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 4.7e-12 73.6 45 82.2
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 77.8
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 77.8
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 77.8
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 77.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 80.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.1e-12 73.2 45 80.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 8.0e-12 72.8 45 77.8
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 8.0e-12 72.8 45 75.6
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.0e-11 72.4 45 80.0
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.0e-11 72.4 45 80.0
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.0e-11 72.4 45 80.0
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.0e-11 72.4 45 77.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.4e-11 72.0 45 80.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.4e-11 72.0 45 80.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.4e-11 72.0 45 80.0
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.4e-11 72.0 45 80.0
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.8e-11 71.6 45 77.8
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 1.8e-11 71.6 45 77.8
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.8e-11 71.6 45 75.6
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 2.3e-11 71.2 45 77.8
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.3e-11 71.2 45 75.6
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.3e-11 71.2 45 80.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.3e-11 71.2 45 80.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.0e-11 70.9 45 75.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 4.0e-11 70.5 45 75.6
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.2e-11 70.1 45 75.6
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 5.2e-11 70.1 45 77.8
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 6.8e-11 69.7 45 75.6
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.8e-11 69.7 45 75.6
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 6.8e-11 69.7 45 75.6
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.8e-11 69.3 45 75.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.2e-10 68.9 45 77.8
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.2e-10 68.9 45 75.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.2e-10 68.9 45 75.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.5e-10 68.6 45 75.6
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 1.5e-10 68.6 45 73.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.0e-10 68.2 45 73.3
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 2.0e-10 68.2 45 71.1
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.6e-10 67.8 44 75.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 71.1
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.6e-10 67.8 45 73.3
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 73.3
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 73.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 73.3
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 73.3
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 71.1
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 71.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 3.4e-10 67.4 45 73.3
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 4.4e-10 67.0 45 71.1
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 5.7e-10 66.6 45 73.3
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 7.5e-10 66.2 44 75.0
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 7.5e-10 66.2 44 72.7
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 7.5e-10 66.2 45 73.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 7.5e-10 66.2 45 71.1
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 7.5e-10 66.2 44 75.0
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 7.5e-10 66.2 44 75.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 7.5e-10 66.2 44 75.0
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 9.8e-10 65.9 44 75.0
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.3e-09 65.5 43 76.7
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.7e-09 65.1 44 70.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.2e-09 64.7 45 66.7
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.2e-09 64.7 45 71.1
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.8e-09 64.3 44 72.7
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.8e-09 64.3 44 72.7
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 3.7e-09 63.9 44 70.5
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 4.8e-09 63.5 44 70.5
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 6.3e-09 63.2 45 68.9
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 8.3e-09 62.8 43 69.8
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.1e-08 62.4 44 68.2
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.4e-08 62.0 44 70.5
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.4e-08 62.0 45 66.7
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.4e-08 61.2 44 65.9
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 2.4e-08 61.2 45 66.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.1e-08 60.8 45 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.4e-08 60.1 44 68.2
SHI23484 Sapria himalayana HOM05D002352 ORTHO05D013021 5.4e-08 60.1 45 60.0
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.6e-07 58.5 45 62.2
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 2.0e-07 58.2 45 60.0
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.5e-07 57.4 44 65.9
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.5e-07 57.4 44 65.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.5e-07 57.0 43 69.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 4.5e-07 57.0 44 63.6
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 3.8e-06 53.9 44 61.4


User provided reference genes

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