Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36183 Trifolium pratense HOM05D005318 ORTHO05D006791 1.4e-110 402.9 196 100.0
Medtr7g088740 Medicago truncatula HOM05D005318 ORTHO05D006791 8.0e-90 334.0 179 89.4
Ca_08698_v3 Cicer arietinum L. HOM05D005318 ORTHO05D006791 6.8e-89 330.9 185 85.4
Psat0s698g0160 Pisum sativum HOM05D005318 ORTHO05D006791 1.1e-83 313.5 187 82.4
Lj1g0025305 Lotus japonicus HOM05D005318 ORTHO05D006791 6.4e-79 297.7 187 78.1
Glyma.03G121100 Glycine max HOM05D005318 ORTHO05D006791 1.1e-75 287.0 168 80.4
Glyma.19G125800 Glycine max HOM05D005318 ORTHO05D006791 6.2e-74 281.2 168 78.6
arahy.Tifrunner.gnm1.ann1.PFNU0X Arachis hypogaea HOM05D005318 ORTHO05D006791 8.3e-71 270.8 173 73.4
arahy.Tifrunner.gnm1.ann1.HZCB2X Arachis hypogaea HOM05D005318 ORTHO05D006791 1.1e-70 270.4 173 73.4
Phvul.001G117700 Phaseolus vulgaris HOM05D005318 ORTHO05D006791 1.6e-69 266.5 176 72.7
Lalb_Chr14g0365451 Lupinus albus HOM05D005318 ORTHO05D006791 6.0e-69 264.6 184 70.7
QL07p013739 Quercus lobata HOM05D005318 ORTHO05D006791 3.3e-67 258.8 186 68.8
ClCG04G005890 Citrullus lanatus HOM05D005318 ORTHO05D006791 6.8e-65 251.1 187 64.2
MD00G1025200 Malus domestica HOM05D005318 ORTHO05D006791 4.4e-64 248.4 187 66.8
CSS0014915 Camellia sinensis var. sinensis HOM05D005318 ORTHO05D006791 7.5e-64 247.7 185 67.0
CsaV3_4G029230 Cucumis sativus L. HOM05D005318 ORTHO05D006791 2.9e-63 245.7 185 65.9
Actinidia37854 Actinidia chinensis HOM05D005318 ORTHO05D006791 1.9e-62 243.0 185 64.3
RhsimUnG0019600 Rhododendron simsii HOM05D005318 ORTHO05D006791 1.9e-62 243.0 191 61.8
FvH4_1g29260 Fragaria vesca HOM05D005318 ORTHO05D006791 2.4e-62 242.7 185 64.9
Thecc.05G118400 Theobroma cacao HOM05D005318 ORTHO05D006791 2.4e-62 242.7 169 68.0
FAN19G2285 Fragaria x ananassa HOM05D005318 ORTHO05D006791 9.2e-62 240.7 185 64.3
Manes.08G162200 Manihot esculenta HOM05D005318 ORTHO05D006791 9.2e-62 240.7 181 67.4
FAN28G1591 Fragaria x ananassa HOM05D005318 ORTHO05D006791 1.6e-61 240.0 185 64.3
Prupe.7G019400 Prunus persica HOM05D005318 ORTHO05D006791 1.6e-61 240.0 187 64.7
Atru.chr1.1378 Acer truncatum HOM05D005318 ORTHO05D006791 2.7e-61 239.2 143 75.5
FAN26G2899 Fragaria x ananassa HOM05D005318 ORTHO05D006791 2.7e-61 239.2 185 63.8
FAN23G1756 Fragaria x ananassa HOM05D005318 ORTHO05D006791 7.8e-61 237.7 185 64.3
Cc06_g21270 Coffea canephora HOM05D005318 ORTHO05D006791 1.3e-60 236.9 185 61.6
vmacro07764 Vaccinium macrocarpon HOM05D005318 ORTHO05D006791 2.3e-60 236.1 175 62.9
Gorai.010G128900 Gossypium raimondii HOM05D005318 ORTHO05D006791 3.0e-60 235.7 135 79.3
COL.COLO4_33519 Corchorus olitorius HOM05D005318 ORTHO05D006791 5.1e-60 235.0 185 64.3
Gohir.D06G113100 Gossypium hirsutum HOM05D005318 ORTHO05D006791 8.6e-60 234.2 135 78.5
Potri.016G028900 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.1e-59 233.8 178 65.2
CiPaw.09G051900 Carya illinoinensis HOM05D005318 ORTHO05D006791 1.5e-59 233.4 187 62.0
DCAR_013530 Daucus carota HOM05D005318 ORTHO05D006791 1.9e-59 233.0 180 62.2
Gohir.A06G109000 Gossypium hirsutum HOM05D005318 ORTHO05D006791 1.9e-59 233.0 135 79.3
Potri.006G031700 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.9e-59 233.0 180 63.3
Sopen02g004490 Solanum pennellii HOM05D005318 ORTHO05D006791 2.5e-59 232.6 189 60.8
TAR633G2118 Trochodendron aralioides HOM05D005318 ORTHO05D006791 4.3e-59 231.9 186 62.9
Hund24536 Selenicereus undatus HOM05D005318 ORTHO05D006791 5.6e-59 231.5 185 61.1
Thhalv10016195m.g Eutrema salsugineum HOM05D005318 ORTHO05D006791 7.3e-59 231.1 141 72.3
Nitab4.5_0001388g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 7.3e-59 231.1 185 58.4
C04p02280 Brassica napus HOM05D005318 ORTHO05D006791 9.5e-59 230.7 147 70.7
CARHR135960 Cardamine hirsuta HOM05D005318 ORTHO05D006791 9.5e-59 230.7 141 71.6
ECA236G3220 Erigeron canadensis HOM05D005318 ORTHO05D006791 9.5e-59 230.7 185 60.5
THA.LOC104803226 Tarenaya hassleriana HOM05D005318 ORTHO05D006791 9.5e-59 230.7 143 71.3
A05p01930 Brassica napus HOM05D005318 ORTHO05D006791 1.2e-58 230.3 147 70.7
BolC4t21874H Brassica oleracea HOM05D005318 ORTHO05D006791 1.2e-58 230.3 147 70.7
Sc19g0007930 Simmondsia chinensis HOM05D005318 ORTHO05D006791 1.2e-58 230.3 184 62.5
BcaC02g12738 Brassica carinata HOM05D005318 ORTHO05D006791 1.6e-58 229.9 141 73.0
Duzib128G1115 Durio zibethinus HOM05D005318 ORTHO05D006791 1.6e-58 229.9 185 63.8
Solyc02g020980.4 Solanum lycopersicum HOM05D005318 ORTHO05D006791 2.8e-58 229.2 189 59.8
BraA05t19191Z Brassica rapa HOM05D005318 ORTHO05D006791 3.6e-58 228.8 147 70.1
Sabra16G0033000 Salix brachista HOM05D005318 ORTHO05D006791 3.6e-58 228.8 178 62.9
Carub.0004s2316 Capsella rubella HOM05D005318 ORTHO05D006791 4.7e-58 228.4 150 67.3
Sopen02g004780 Solanum pennellii HOM05D005318 ORTHO05D006791 6.2e-58 228.0 142 72.5
Migut.K00161 Erythranthe guttata HOM05D005318 ORTHO05D006791 1.1e-57 227.3 161 65.8
Peaxi162Scf01017g00016 Petunia axillaris HOM05D005318 ORTHO05D006791 1.1e-57 227.3 178 60.1
Sabra06G0021100 Salix brachista HOM05D005318 ORTHO05D006791 1.1e-57 227.3 135 76.3
Nitab4.5_0000092g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 1.8e-57 226.5 138 72.5
Aa31LG3G1260 Aethionema arabicum HOM05D005318 ORTHO05D006791 2.4e-57 226.1 148 68.9
HanXRQChr06g0177301 Helianthus annuus HOM05D005318 ORTHO05D006791 2.4e-57 226.1 187 59.9
Aqoxy1G00050 Aquilegia oxysepala HOM05D005318 ORTHO05D006791 6.8e-57 224.6 178 61.2
Ciclev10010989m.g Citrus clementina HOM05D005318 ORTHO05D006791 6.8e-57 224.6 185 60.5
Lsat_1_v5_gn_8_83900 Lactuca sativa HOM05D005318 ORTHO05D006791 6.8e-57 224.6 167 62.9
ATR0782G050 Amborella trichopoda HOM05D005318 ORTHO05D006791 8.9e-57 224.2 136 74.3
RcHm_v2.0_Chr3g0494731 Rosa chinensis HOM05D005318 ORTHO05D006791 1.2e-56 223.8 181 61.3
TWI74G0513 Tripterygium wilfordii HOM05D005318 ORTHO05D006791 2.6e-56 222.6 185 62.2
unitig_736.g22282 Utricularia gibba HOM05D005318 ORTHO05D006791 3.4e-56 222.2 135 73.3
Dinv26400 Davidia involucrata HOM05D005318 ORTHO05D006791 9.9e-56 220.7 185 60.5
Cfa019951 Carpinus fangiana HOM05D005318 ORTHO05D006791 6.4e-55 218.0 177 61.6
CANSAT64G0498 Cannabis sativa HOM05D005318 ORTHO05D006791 1.4e-54 216.9 187 60.4
MBI19_g45589_MAGBIO Magnolia biondii HOM05D005318 ORTHO05D006791 3.2e-54 215.7 187 57.2
Lj2A411T33 Lonicera japonica HOM05D005318 ORTHO05D006791 5.4e-54 214.9 213 53.5
AL4G38790 Arabidopsis lyrata HOM05D005318 ORTHO05D006791 7.1e-54 214.5 147 66.0
GSVIVG01025810001 Vitis vinifera HOM05D005318 ORTHO05D006791 9.2e-54 214.2 185 58.4
AT2G40840 Arabidopsis thaliana HOM05D005318 ORTHO05D006791 2.1e-53 213.0 141 66.0
FAN06G1462 Fragaria x ananassa HOM05D005318 ORTHO05D006791 2.7e-53 212.6 151 67.5
Sp4g23170 Schrenkiella parvula HOM05D005318 ORTHO05D006791 2.7e-53 212.6 160 61.9
HPP92_014255 Vanilla planifolia HOM05D005318 ORTHO05D006791 7.8e-53 211.1 157 62.4
EL10Ac3g07301 Beta vulgaris HOM05D005318 ORTHO05D006791 3.0e-52 209.1 168 60.7
Oeu064748.1 Olea europaea HOM05D005318 ORTHO05D006791 1.1e-51 207.2 144 68.8
Ah.04g150540 Amaranthus hybridus HOM05D005318 ORTHO05D006791 1.5e-51 206.8 149 65.1
Oeu064749.1 Olea europaea HOM05D005318 ORTHO05D006791 1.5e-51 206.8 144 68.1
Eucgr.K01679 Eucalyptus grandis HOM05D005318 ORTHO05D006791 2.5e-51 206.1 185 56.2
Os07g0662900 Oryza sativa ssp. japonica HOM05D005318 ORTHO05D006791 2.5e-51 206.1 151 62.9
AUR62018414 Chenopodium quinoa HOM05D005318 ORTHO05D006791 4.3e-51 205.3 167 59.3
PGR142G3097 Punica granatum HOM05D005318 ORTHO05D006791 4.3e-51 205.3 160 61.2
AUR62021029 Chenopodium quinoa HOM05D005318 ORTHO05D006791 7.3e-51 204.5 167 58.7
CDE08G1108 Ceratophyllum demersum HOM05D005318 ORTHO05D006791 8.1e-50 201.1 132 67.4
PSO339G3620 Papaver somniferum HOM05D005318 ORTHO05D006791 2.9e-47 192.6 177 53.7
SMO203G0025 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 6.4e-47 191.4 125 70.4
PSO384G1877 Papaver somniferum HOM05D005318 ORTHO05D006791 3.2e-46 189.1 177 53.1
Mapoly0011s0190 Marchantia polymorpha HOM05D005318 ORTHO05D006791 9.3e-46 187.6 170 53.5
Cpa.g.sc92.60 Carica papaya HOM05D005318 ORTHO05D006791 1.2e-45 187.2 110 75.5
AagrBONN_evm.TU.Sc2ySwM_344.1228 Anthoceros agrestis HOM05D005318 ORTHO05D006791 2.7e-45 186.0 153 58.8
Pp3c15_25660 Physcomitrium patens HOM05D005318 ORTHO05D006791 3.5e-45 185.7 152 56.6
SMO327G0045 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 1.5e-40 170.2 97 76.3
CBR_g6687 Chara braunii HOM05D005318 ORTHO05D006791 3.2e-38 162.5 120 55.0
SGA_v2.0_scaffold240G44129 Striga asiatica HOM05D005318 ORTHO05D006791 7.9e-37 157.9 176 51.1
Hund19067 Selenicereus undatus HOM05D005318 ORTHO05D006791 2.4e-33 146.4 112 63.4
PRCOL_00001049 Prasinoderma coloniale HOM05D005318 ORTHO05D006791 4.5e-32 142.1 128 51.6
Oeu060769.1 Olea europaea HOM05D005318 ORTHO05D006791 1.9e-30 136.7 181 49.2
Cre02.g095126 Chlamydomonas reinhardtii HOM05D005318 ORTHO05D006791 7.9e-29 131.3 129 48.8
Sed0003650 Sechium edule HOM05D005318 ORTHO05D006791 1.3e-28 130.6 73 75.3
CAN.G39.12 Capsicum annuum HOM05D005318 ORTHO05D006791 2.3e-28 129.8 73 74.0
MCO02G281 Micromonas commoda HOM05D005318 ORTHO05D006791 5.1e-28 128.6 127 51.2
Zm00001eb197360 Zea mays HOM05D005318 ORTHO05D006791 2.6e-24 116.3 80 65.0
PRCOL_00006523 Prasinoderma coloniale HOM05D006120 ORTHO05D007913 4.2e-06 55.8 164 26.8


User provided reference genes

Program Settings