Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36161 Trifolium pratense HOM05D002870 ORTHO05D003241 7.5e-25 116.3 56 100.0
Ca_24490_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 2.0e-22 108.2 53 96.2
Ca_02563_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 4.5e-22 107.1 53 94.3
TPR.G40100 Trifolium pratense HOM05D002870 ORTHO05D003241 5.9e-22 106.7 53 94.3
Lj6g0013815 Lotus japonicus HOM05D002870 ORTHO05D003241 1.7e-21 105.1 53 92.5
Psat1g019840 Pisum sativum HOM05D002870 ORTHO05D003241 2.3e-21 104.8 53 92.5
Medtr2g048900 Medicago truncatula HOM05D002870 ORTHO05D003241 3.9e-21 104.0 53 92.5
Thecc.06G146800 Theobroma cacao HOM05D002870 ORTHO05D003241 8.6e-21 102.8 53 88.7
Lalb_Chr08g0233281 Lupinus albus HOM05D002870 ORTHO05D003241 1.1e-20 102.4 53 88.7
Lalb_Chr11g0073351 Lupinus albus HOM05D002870 ORTHO05D003241 1.1e-20 102.4 53 90.6
arahy.Tifrunner.gnm1.ann1.TYZ9EK Arachis hypogaea HOM05D002870 ORTHO05D003241 1.5e-20 102.1 53 90.6
arahy.Tifrunner.gnm1.ann1.X554XP Arachis hypogaea HOM05D002870 ORTHO05D003241 1.5e-20 102.1 53 90.6
Glyma.15G194900 Glycine max HOM05D002870 ORTHO05D003241 1.9e-20 101.7 53 88.7
Cfa000918 Carpinus fangiana HOM05D002870 ORTHO05D003241 2.5e-20 101.3 53 86.8
Lj1g0022756 Lotus japonicus HOM05D002870 ORTHO05D003241 2.5e-20 101.3 53 88.7
THA.LOC104812866 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 2.5e-20 101.3 53 86.8
QL05p055495 Quercus lobata HOM05D002870 ORTHO05D003241 3.3e-20 100.9 53 88.7
CiPaw.09G121100 Carya illinoinensis HOM05D002870 ORTHO05D003241 4.3e-20 100.5 53 86.8
CiPaw.10G089800 Carya illinoinensis HOM05D002870 ORTHO05D003241 4.3e-20 100.5 52 88.5
Lsat_1_v5_gn_9_103381 Lactuca sativa HOM05D002870 ORTHO05D003241 4.3e-20 100.5 53 84.9
TWI53G0974 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 4.3e-20 100.5 53 86.8
MELO3C007116.2 Cucumis melo HOM05D002870 ORTHO05D003241 5.6e-20 100.1 53 86.8
Sc03g0007830 Simmondsia chinensis HOM05D002870 ORTHO05D003241 5.6e-20 100.1 53 84.9
Atru.chr10.1158 Acer truncatum HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 88.7
ClCG01G024790 Citrullus lanatus HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 84.9
COL.COLO4_31032 Corchorus olitorius HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 84.9
Eucgr.D00278 Eucalyptus grandis HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 86.8
Thhalv10016606m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 83.0
Glyma.09G086800 Glycine max HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 86.8
Sp4g21330 Schrenkiella parvula HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 83.0
TWI09G1176 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 7.3e-20 99.8 53 84.9
Duzib192G0466 Durio zibethinus HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 84.9
Duzib235G0832 Durio zibethinus HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 84.9
Gohir.A05G146900 Gossypium hirsutum HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 84.9
Gohir.D05G149400 Gossypium hirsutum HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 84.9
Gorai.009G153400 Gossypium raimondii HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 84.9
HanXRQChr13g0389791 Helianthus annuus HOM05D002870 ORTHO05D003241 9.5e-20 99.4 52 86.5
RcHm_v2.0_Chr5g0027151 Rosa chinensis HOM05D002870 ORTHO05D003241 9.5e-20 99.4 53 83.0
Nitab4.5_0001612g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 1.2e-19 99.0 53 84.9
Nitab4.5_0004166g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 1.2e-19 99.0 53 84.9
Sed0003019 Sechium edule HOM05D002870 ORTHO05D003241 1.2e-19 99.0 53 84.9
BcaC02g12013 Brassica carinata HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 81.1
A05p07240 Brassica napus HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 81.1
C04p08700 Brassica napus HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 81.1
BolC4t22462H Brassica oleracea HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 81.1
BraA05t19689Z Brassica rapa HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 81.1
CARHR133700 Cardamine hirsuta HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 83.0
Cc05_g10040 Coffea canephora HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 83.0
Eucgr.F03193 Eucalyptus grandis HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 83.0
FAN16G0642 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 84.9
Solyc07g056390.4 Solanum lycopersicum HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 83.0
PGSC0003DMG400031102 Solanum tuberosum HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 83.0
VMungo1309G2492 Vigna mungo HOM05D002870 ORTHO05D003241 1.6e-19 98.6 53 88.7
BcaB02g09170 Brassica carinata HOM05D002870 ORTHO05D003241 2.1e-19 98.2 53 81.1
CANSAT35G1212 Cannabis sativa HOM05D002870 ORTHO05D003241 2.1e-19 98.2 53 83.0
Carub.0004s2099 Capsella rubella HOM05D002870 ORTHO05D003241 2.1e-19 98.2 53 81.1
CsaV3_6G051910 Cucumis sativus L. HOM05D002870 ORTHO05D003241 2.1e-19 98.2 53 84.9
ECA240G4166 Erigeron canadensis HOM05D002870 ORTHO05D003241 2.1e-19 98.2 52 84.6
Phvul.009G215600 Phaseolus vulgaris HOM05D002870 ORTHO05D003241 2.1e-19 98.2 53 86.8
CAN.G585.1 Capsicum annuum HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 83.0
Ciclev10019948m.g Citrus clementina HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 83.0
DCAR_027899 Daucus carota HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 81.1
Lj1C805G10 Lonicera japonica HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 81.1
PGR083G1793 Punica granatum HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 83.0
GSVIVG01021532001 Vitis vinifera HOM05D002870 ORTHO05D003241 3.6e-19 97.4 53 84.9
EL10Ac3g06812 Beta vulgaris HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 81.1
EL10Ac4g08526 Beta vulgaris HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 81.1
Cpa.g.sc17.32 Carica papaya HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 83.0
AUR62013963 Chenopodium quinoa HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 81.1
Manes.17G073100 Manihot esculenta HOM05D002870 ORTHO05D003241 4.7e-19 97.1 52 82.7
Peaxi162Scf00111g00628 Petunia axillaris HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 81.1
Sabra16G0291300 Salix brachista HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 83.0
Sopen07g029760 Solanum pennellii HOM05D002870 ORTHO05D003241 4.7e-19 97.1 53 81.1
CSS0027530 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 83.0
CSS0034829 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 83.0
CSS0048151 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 83.0
DCAR_021067 Daucus carota HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 81.1
DCAR_021069 Daucus carota HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 81.1
Dinv21345 Davidia involucrata HOM05D002870 ORTHO05D003241 6.1e-19 96.7 53 83.0
Manes.15G124100 Manihot esculenta HOM05D002870 ORTHO05D003241 6.1e-19 96.7 52 80.8
Actinidia20595 Actinidia chinensis HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 81.1
Dinv26639 Davidia involucrata HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 81.1
FvH4_3g05200 Fragaria vesca HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
FAN11G2808 Fragaria x ananassa HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
FAN16G0159 Fragaria x ananassa HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
FAN16G3323 Fragaria x ananassa HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
FAN21G1493 Fragaria x ananassa HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
FAN25G3158 Fragaria x ananassa HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
MD05G1280900 Malus domestica HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
MD10G1259300 Malus domestica HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
Prupe.4G084000 Prunus persica HOM05D002870 ORTHO05D003241 8.0e-19 96.3 53 83.0
AL4G36270 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 1.0e-18 95.9 53 79.2
Ciclev10015325m.g Citrus clementina HOM05D002870 ORTHO05D003241 1.0e-18 95.9 53 83.0
Hund10319 Selenicereus undatus HOM05D002870 ORTHO05D003241 1.0e-18 95.9 53 81.1
AT1G72280 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 1.4e-18 95.5 53 81.1
Carub.0002s1908 Capsella rubella HOM05D002870 ORTHO05D003241 1.4e-18 95.5 53 81.1
CARHR065120 Cardamine hirsuta HOM05D002870 ORTHO05D003241 1.4e-18 95.5 53 81.1
RcHm_v2.0_Chr5g0014551 Rosa chinensis HOM05D002870 ORTHO05D003241 1.4e-18 95.5 53 81.1
RcHm_v2.0_Chr5g0027251 Rosa chinensis HOM05D002870 ORTHO05D003241 1.4e-18 95.5 53 81.1
Potri.011G139900 Populus trichocarpa HOM05D002870 ORTHO05D003241 1.8e-18 95.1 52 82.7
Actinidia12331 Actinidia chinensis HOM05D002870 ORTHO05D003241 2.3e-18 94.7 53 79.2
AT2G38960 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 2.3e-18 94.7 53 79.2
Gohir.A06G139100 Gossypium hirsutum HOM05D002870 ORTHO05D003241 2.3e-18 94.7 53 83.0
RcHm_v2.0_Chr5g0027131 Rosa chinensis HOM05D002870 ORTHO05D003241 2.3e-18 94.7 53 79.2
Ah.06g187400 Amaranthus hybridus HOM05D002870 ORTHO05D003241 3.1e-18 94.4 53 77.4
AL2G31950 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 3.1e-18 94.4 53 79.2
Atru.chr2.1829 Acer truncatum HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 79.2
BcaB03g14971 Brassica carinata HOM05D002870 ORTHO05D003241 4.0e-18 94.0 52 80.8
PSO541G4247 Papaver somniferum HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 77.4
PSO675G5265 Papaver somniferum HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 77.4
Potri.001G436100 Populus trichocarpa HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 81.1
Sabra16G0290200 Salix brachista HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 81.1
TAR627G0985 Trochodendron aralioides HOM05D002870 ORTHO05D003241 4.0e-18 94.0 53 79.2
Migut.H02060 Erythranthe guttata HOM05D002870 ORTHO05D003241 5.2e-18 93.6 53 75.5
vmacro12028 Vaccinium macrocarpon HOM05D002870 ORTHO05D003241 5.2e-18 93.6 53 81.1
MSTRG.12854 Avicennia marina HOM05D002870 ORTHO05D003241 6.8e-18 93.2 53 75.5
Sabra11G0126000 Salix brachista HOM05D002870 ORTHO05D003241 6.8e-18 93.2 53 81.1
SGA_v2.0_scaffold130G34240 Striga asiatica HOM05D002870 ORTHO05D003241 6.8e-18 93.2 53 79.2
MBI03_g18945_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 8.9e-18 92.8 53 77.4
MBI16_g18970_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 8.9e-18 92.8 53 77.4
Peaxi162Scf00045g02438 Petunia axillaris HOM05D002870 ORTHO05D003241 8.9e-18 92.8 53 81.1
Prupe.4G145200 Prunus persica HOM05D002870 ORTHO05D003241 8.9e-18 92.8 53 79.2
Aqoxy1G01676 Aquilegia oxysepala HOM05D002870 ORTHO05D003241 1.2e-17 92.4 53 77.4
BcaC08g46674 Brassica carinata HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
A07p38400 Brassica napus HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
C06p46490 Brassica napus HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
BolC6t39695H Brassica oleracea HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
BraA07t31401Z Brassica rapa HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
Dinv21534 Davidia involucrata HOM05D002870 ORTHO05D003241 1.2e-17 92.4 53 77.4
Thhalv10018491m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 1.2e-17 92.4 52 78.8
Gohir.D06G143800 Gossypium hirsutum HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 81.1
Lj1A1170T29 Lonicera japonica HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 77.4
Nitab4.5_0001594g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 79.2
Nitab4.5_0009731g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 79.2
Oeu031301.1 Olea europaea HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 81.1
Os03g0733800 Oryza sativa ssp. japonica HOM05D002870 ORTHO05D003241 1.5e-17 92.0 52 82.7
Sed0023606 Sechium edule HOM05D002870 ORTHO05D003241 1.5e-17 92.0 53 81.1
Rhsim06G0183700 Rhododendron simsii HOM05D002870 ORTHO05D003241 2.0e-17 91.7 53 77.4
Zm00001eb215480 Zea mays HOM05D002870 ORTHO05D003241 2.0e-17 91.7 52 78.8
Sp5g27350 Schrenkiella parvula HOM05D002870 ORTHO05D003241 2.6e-17 91.3 52 76.9
THA.LOC104812282 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 2.6e-17 91.3 52 78.8
Aa31LG4G2640 Aethionema arabicum HOM05D002870 ORTHO05D003241 3.4e-17 90.9 52 76.9
HanXRQChr11g0330001 Helianthus annuus HOM05D002870 ORTHO05D003241 4.4e-17 90.5 53 75.5
CANSAT56G1661 Cannabis sativa HOM05D002870 ORTHO05D003241 5.8e-17 90.1 53 73.6
CANSAT56G2737 Cannabis sativa HOM05D002870 ORTHO05D003241 5.8e-17 90.1 53 73.6
Gorai.010G167600 Gossypium raimondii HOM05D002870 ORTHO05D003241 5.8e-17 90.1 53 79.2
Zm00001eb056320 Zea mays HOM05D002870 ORTHO05D003241 5.8e-17 90.1 52 78.8
DCAR_017560 Daucus carota HOM05D002870 ORTHO05D003241 7.5e-17 89.7 53 77.4
Lalb_Chr19g0133501 Lupinus albus HOM05D002870 ORTHO05D003241 1.3e-16 89.0 53 77.4
ECA236G1108 Erigeron canadensis HOM05D002870 ORTHO05D003241 1.7e-16 88.6 52 75.0
Actinidia01571 Actinidia chinensis HOM05D002870 ORTHO05D003241 2.2e-16 88.2 57 75.4
HPP92_015880 Vanilla planifolia HOM05D002870 ORTHO05D003241 2.9e-16 87.8 53 71.7
Nn3g20427 Nelumbo nucifera HOM05D002870 ORTHO05D003241 3.7e-16 87.4 53 75.5
PGSC0003DMG400004304 Solanum tuberosum HOM05D002870 ORTHO05D003241 3.7e-16 87.4 53 73.6
SGA_v2.0_scaffold51G18638 Striga asiatica HOM05D002870 ORTHO05D003241 3.7e-16 87.4 53 81.1
Aa31LG5G20700 Aethionema arabicum HOM05D002870 ORTHO05D003241 6.4e-16 86.7 66 63.6
CDE06G0487 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 8.3e-16 86.3 53 73.6
CDE07G2073 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 8.3e-16 86.3 53 73.6
Migut.H01352 Erythranthe guttata HOM05D002870 ORTHO05D003241 8.3e-16 86.3 53 77.4
RcHm_v2.0_Chr5g0027161 Rosa chinensis HOM05D002870 ORTHO05D003241 8.3e-16 86.3 53 77.4
Lsat_1_v5_gn_7_99481 Lactuca sativa HOM05D002870 ORTHO05D003241 1.1e-15 85.9 53 71.7
GSVIVG01020501001 Vitis vinifera HOM05D002870 ORTHO05D003241 1.4e-15 85.5 53 71.7
unitig_744.g24131 Utricularia gibba HOM05D002870 ORTHO05D003241 4.1e-15 84.0 53 75.5
ATR0665G063 Amborella trichopoda HOM05D002870 ORTHO05D003241 7.0e-15 83.2 53 71.7
CAN.G222.148 Capsicum annuum HOM05D002870 ORTHO05D003241 7.0e-15 83.2 53 77.4
HanXRQChr09g0257511 Helianthus annuus HOM05D002870 ORTHO05D003241 7.0e-15 83.2 52 69.2
unitig_21.g20643 Utricularia gibba HOM05D002870 ORTHO05D003241 2.0e-14 81.6 53 71.7
HPP92_018505 Vanilla planifolia HOM05D002870 ORTHO05D003241 2.0e-14 81.6 52 73.1
HanXRQChr14g0437601 Helianthus annuus HOM05D002870 ORTHO05D003241 2.7e-14 81.3 52 67.3
MSTRG.14781 Avicennia marina HOM05D002870 ORTHO05D003241 3.5e-14 80.9 53 79.2
SalBow6G5801 Salvia bowleyana HOM05D002870 ORTHO05D003241 3.5e-14 80.9 65 64.6
Haze_05638 Corylus avellana HOM05D002870 ORTHO05D003241 3.9e-13 77.4 53 71.7
Mapoly0142s0031 Marchantia polymorpha HOM05D002870 ORTHO05D003241 1.5e-12 75.5 53 60.4
SEGI_07160 Sequoiadendron giganteum HOM05D002870 ORTHO05D003241 1.5e-12 75.5 52 65.4
SEGI_34893 Sequoiadendron giganteum HOM05D002870 ORTHO05D003241 2.5e-12 74.7 53 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1103 Anthoceros agrestis HOM05D002870 ORTHO05D003241 9.5e-12 72.8 53 58.5
SMO118G0076 Selaginella moellendorffii HOM05D002870 ORTHO05D003241 9.5e-12 72.8 53 64.2
Pp3c16_14150 Physcomitrium patens HOM05D002870 ORTHO05D003241 1.6e-11 72.0 53 58.5
TPR.G21811 Trifolium pratense HOM05D002870 ORTHO05D003241 1.6e-11 72.0 33 93.9
Hma1.2p1_0198F.1_g085490 Hydrangea macrophylla HOM05D002870 ORTHO05D003241 3.6e-11 70.9 53 64.2
Hund21550 Selenicereus undatus HOM05D002870 ORTHO05D003241 4.7e-11 70.5 41 70.7
Pp3c5_8550 Physcomitrium patens HOM05D002870 ORTHO05D003241 6.2e-11 70.1 53 56.6
Rhsim13G0116600 Rhododendron simsii HOM05D002870 ORTHO05D003241 1.3e-08 62.4 114 36.8
PRCOL_00002430 Prasinoderma coloniale HOM05D002870 ORTHO05D003241 1.1e-07 59.3 61 42.6
TPR.G17978 Trifolium pratense HOM05D002870 ORTHO05D003241 1.2e-06 55.8 23 100.0
MCO16G565 Micromonas commoda HOM05D002870 ORTHO05D017807 6.0e-06 53.5 54 40.7


User provided reference genes

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