Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36142 Trifolium pratense HOM05D001170 ORTHO05D002759 1.7e-27 125.2 60 100.0
TPR.G37160 Trifolium pratense HOM05D001170 ORTHO05D002759 8.3e-14 79.7 38 97.4
Psat5g300480 Pisum sativum HOM05D001170 ORTHO05D002759 4.1e-13 77.4 38 92.1
Medtr2g103130 Medicago truncatula HOM05D001170 ORTHO05D002759 9.2e-13 76.3 38 89.5
Ca_01086_v3 Cicer arietinum L. HOM05D001170 ORTHO05D002759 2.1e-12 75.1 38 86.8
Lalb_Chr22g0351021 Lupinus albus HOM05D001170 ORTHO05D002759 2.7e-12 74.7 40 82.5
TWI12G0603 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 3.5e-12 74.3 38 86.8
Glyma.13G363100 Glycine max HOM05D001170 ORTHO05D002759 4.6e-12 73.9 38 84.2
TWI18G1279 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 4.6e-12 73.9 38 86.8
Eucgr.D00992 Eucalyptus grandis HOM05D001170 ORTHO05D002759 6.0e-12 73.6 38 84.2
Glyma.08G209900 Glycine max HOM05D001170 ORTHO05D002759 6.0e-12 73.6 38 84.2
Manes.04G117000 Manihot esculenta HOM05D001170 ORTHO05D002759 7.8e-12 73.2 38 86.8
PGR102G1290 Punica granatum HOM05D001170 ORTHO05D002759 7.8e-12 73.2 38 84.2
COL.COLO4_12888 Corchorus olitorius HOM05D001170 ORTHO05D002759 1.0e-11 72.8 37 86.5
Duzib192G0175 Durio zibethinus HOM05D001170 ORTHO05D002759 1.0e-11 72.8 37 86.5
Lj3g0006687 Lotus japonicus HOM05D001170 ORTHO05D002759 1.0e-11 72.8 38 84.2
TWI12G0482 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.0e-11 72.8 38 84.2
Aa31LG8G2860 Aethionema arabicum HOM05D001170 ORTHO05D002759 1.3e-11 72.4 38 86.8
Lj5A68T68 Lonicera japonica HOM05D001170 ORTHO05D002759 2.3e-11 71.6 38 84.2
THA.LOC104815538 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 3.0e-11 71.2 37 86.5
THA.LOC104818039 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 3.0e-11 71.2 37 86.5
Eucgr.D00987 Eucalyptus grandis HOM05D001170 ORTHO05D002759 3.9e-11 70.9 38 78.9
Gohir.A10G076500 Gossypium hirsutum HOM05D001170 ORTHO05D002759 3.9e-11 70.9 38 81.6
Gohir.D10G074800 Gossypium hirsutum HOM05D001170 ORTHO05D002759 3.9e-11 70.9 38 81.6
Gorai.011G080700 Gossypium raimondii HOM05D001170 ORTHO05D002759 3.9e-11 70.9 38 81.6
Lj3g0003704 Lotus japonicus HOM05D001170 ORTHO05D002759 3.9e-11 70.9 37 83.8
Thecc.06G074000 Theobroma cacao HOM05D001170 ORTHO05D002759 3.9e-11 70.9 37 83.8
Atru.chr1.3105 Acer truncatum HOM05D001170 ORTHO05D002759 6.6e-11 70.1 34 91.2
CiPaw.01G244000 Carya illinoinensis HOM05D001170 ORTHO05D002759 1.1e-10 69.3 38 78.9
Dinv11584 Davidia involucrata HOM05D001170 ORTHO05D002759 1.1e-10 69.3 38 81.6
Glyma.07G032600 Glycine max HOM05D001170 ORTHO05D002759 1.1e-10 69.3 37 81.1
QL07p015408 Quercus lobata HOM05D001170 ORTHO05D002759 1.1e-10 69.3 38 78.9
MSTRG.334 Avicennia marina HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 78.9
CSS0016276 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 81.6
FvH4_6g30390 Fragaria vesca HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 84.2
FAN02G4334 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 84.2
FAN05G3026 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 84.2
FAN09G3438 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 84.2
FAN14G1569 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.5e-10 68.9 38 84.2
CSS0045002 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.9e-10 68.6 38 81.6
Cfa010927 Carpinus fangiana HOM05D001170 ORTHO05D002759 1.9e-10 68.6 38 76.3
Ciclev10026629m.g Citrus clementina HOM05D001170 ORTHO05D002759 1.9e-10 68.6 37 81.1
Haze_03014 Corylus avellana HOM05D001170 ORTHO05D002759 1.9e-10 68.6 38 76.3
Haze_03021 Corylus avellana HOM05D001170 ORTHO05D002759 1.9e-10 68.6 38 76.3
Dinv30210 Davidia involucrata HOM05D001170 ORTHO05D002759 1.9e-10 68.6 38 81.6
Manes.11G052500 Manihot esculenta HOM05D001170 ORTHO05D002759 2.5e-10 68.2 37 83.8
Phvul.010G153500 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 2.5e-10 68.2 37 78.4
Prupe.3G079000 Prunus persica HOM05D001170 ORTHO05D002759 2.5e-10 68.2 38 81.6
C01p48740 Brassica napus HOM05D001170 ORTHO05D002759 3.3e-10 67.8 39 76.9
CANSAT64G0395 Cannabis sativa HOM05D001170 ORTHO05D002759 3.3e-10 67.8 38 78.9
vmacro15570 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 3.3e-10 67.8 38 76.3
VMungo0331G1315 Vigna mungo HOM05D001170 ORTHO05D002759 3.3e-10 67.8 37 78.4
GSVIVG01017244001 Vitis vinifera HOM05D001170 ORTHO05D002759 3.3e-10 67.8 38 78.9
BcaC09g48547 Brassica carinata HOM05D001170 ORTHO05D002759 4.3e-10 67.4 39 76.9
A01p38430 Brassica napus HOM05D001170 ORTHO05D002759 4.3e-10 67.4 39 76.9
BolC1t04829H Brassica oleracea HOM05D001170 ORTHO05D002759 4.3e-10 67.4 39 76.9
BraA01t03893Z Brassica rapa HOM05D001170 ORTHO05D002759 4.3e-10 67.4 39 76.9
PSO210G6149 Papaver somniferum HOM05D001170 ORTHO05D002759 4.3e-10 67.4 38 78.9
RcHm_v2.0_Chr2g0136741 Rosa chinensis HOM05D001170 ORTHO05D002759 4.3e-10 67.4 37 83.8
Solyc06g067960.3 Solanum lycopersicum HOM05D001170 ORTHO05D002759 4.3e-10 67.4 38 78.9
Sopen06g025240 Solanum pennellii HOM05D001170 ORTHO05D002759 4.3e-10 67.4 38 78.9
CsaV3_4G001380 Cucumis sativus L. HOM05D001170 ORTHO05D002759 5.6e-10 67.0 38 76.3
Prupe.8G067300 Prunus persica HOM05D001170 ORTHO05D002759 5.6e-10 67.0 37 81.1
AT3G15660 Arabidopsis thaliana HOM05D001170 ORTHO05D002759 7.3e-10 66.6 38 78.9
Nn7g37528 Nelumbo nucifera HOM05D001170 ORTHO05D002759 7.3e-10 66.6 38 76.3
AL3G28320 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 9.5e-10 66.2 37 81.1
CSS0022469 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 9.5e-10 66.2 38 78.9
CARHR090750 Cardamine hirsuta HOM05D001170 ORTHO05D002759 9.5e-10 66.2 37 81.1
CDE01G0177 Ceratophyllum demersum HOM05D001170 ORTHO05D002759 9.5e-10 66.2 38 76.3
Cc05_g02070 Coffea canephora HOM05D001170 ORTHO05D002759 9.5e-10 66.2 38 76.3
Thhalv10021647m.g Eutrema salsugineum HOM05D001170 ORTHO05D002759 9.5e-10 66.2 37 81.1
Sc09g0002660 Simmondsia chinensis HOM05D001170 ORTHO05D002759 9.5e-10 66.2 38 73.7
CSS0022165 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.2e-09 65.9 38 78.9
CAN.G395.44 Capsicum annuum HOM05D001170 ORTHO05D002759 1.2e-09 65.9 38 76.3
PGSC0003DMG401028515 Solanum tuberosum HOM05D001170 ORTHO05D002759 1.2e-09 65.9 38 76.3
TAR636G1119 Trochodendron aralioides HOM05D001170 ORTHO05D002759 1.2e-09 65.9 38 73.7
Actinidia28998 Actinidia chinensis HOM05D001170 ORTHO05D002759 1.6e-09 65.5 38 76.3
MELO3C017902.2 Cucumis melo HOM05D001170 ORTHO05D002759 1.6e-09 65.5 38 73.7
Nn3g19222 Nelumbo nucifera HOM05D002802 ORTHO05D003166 1.6e-09 65.5 38 76.3
SGA_v2.0_scaffold39G15188 Striga asiatica HOM05D001170 ORTHO05D002759 1.6e-09 65.5 37 75.7
C05p50770 Brassica napus HOM05D001170 ORTHO05D002759 2.1e-09 65.1 37 78.4
CSS0043406 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 2.1e-09 65.1 38 76.3
ClCG10G010110 Citrullus lanatus HOM05D001170 ORTHO05D002759 2.1e-09 65.1 38 73.7
Oeu033463.1 Olea europaea HOM05D001170 ORTHO05D002759 2.1e-09 65.1 34 82.4
Sp3g13960 Schrenkiella parvula HOM05D001170 ORTHO05D002759 2.1e-09 65.1 38 76.3
A05p33760 Brassica napus HOM05D001170 ORTHO05D002759 2.8e-09 64.7 37 78.4
BraA05t22199Z Brassica rapa HOM05D001170 ORTHO05D002759 2.8e-09 64.7 37 78.4
DCAR_021328 Daucus carota HOM05D001170 ORTHO05D002759 2.8e-09 64.7 38 76.3
PSO170G1001 Papaver somniferum HOM05D001170 ORTHO05D002759 2.8e-09 64.7 38 73.7
Rhsim02G0062300 Rhododendron simsii HOM05D001170 ORTHO05D002759 2.8e-09 64.7 38 71.1
SalBow5G2628 Salvia bowleyana HOM05D001170 ORTHO05D002759 2.8e-09 64.7 39 69.2
MD17G1204000 Malus domestica HOM05D001170 ORTHO05D002759 3.6e-09 64.3 38 76.3
Nitab4.5_0000620g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 3.6e-09 64.3 38 73.7
PSO407G0198 Papaver somniferum HOM05D001170 ORTHO05D002759 3.6e-09 64.3 37 75.7
CSS0029114 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.7e-09 63.9 38 78.9
Migut.B01277 Erythranthe guttata HOM05D001170 ORTHO05D002759 4.7e-09 63.9 38 76.3
Carub.0003s1541 Capsella rubella HOM05D001170 ORTHO05D002759 6.2e-09 63.5 38 76.3
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 6.2e-09 63.5 38 73.7
Cc04_g03980 Coffea canephora HOM05D001170 ORTHO05D002759 8.1e-09 63.2 37 75.7
Peaxi162Scf00207g00075 Petunia axillaris HOM05D000347 ORTHO05D002759 8.1e-09 63.2 38 73.7
Ah.05g170000 Amaranthus hybridus HOM05D001170 ORTHO05D002759 1.1e-08 62.8 38 68.4
MBI01_g11878_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 1.1e-08 62.8 38 71.1
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 1.1e-08 62.8 38 71.1
BcaB04g20909 Brassica carinata HOM05D001170 ORTHO05D002759 2.3e-08 61.6 37 73.0
TAR383G0630 Trochodendron aralioides HOM05D001170 ORTHO05D002759 2.3e-08 61.6 38 76.3
AUR62027755 Chenopodium quinoa HOM05D001170 ORTHO05D002759 3.1e-08 61.2 37 70.3
AUR62038520 Chenopodium quinoa HOM05D001170 ORTHO05D002759 3.1e-08 61.2 37 70.3
ECA246G2008 Erigeron canadensis HOM05D001170 ORTHO05D002759 3.1e-08 61.2 38 71.1
Sed0018385 Sechium edule HOM05D001170 ORTHO05D002759 3.1e-08 61.2 38 71.1
HanXRQChr16g0504211 Helianthus annuus HOM05D001170 ORTHO05D002759 4.0e-08 60.8 38 73.7
Lsat_1_v5_gn_1_37260 Lactuca sativa HOM05D001170 ORTHO05D002759 4.0e-08 60.8 38 73.7
Lsat_1_v5_gn_6_117141 Lactuca sativa HOM05D001170 ORTHO05D002759 4.0e-08 60.8 38 71.1
unitig_26.g9275 Utricularia gibba HOM05D001170 ORTHO05D002759 4.0e-08 60.8 38 65.8
ECA234G3104 Erigeron canadensis HOM05D001170 ORTHO05D002759 5.2e-08 60.5 38 73.7
HanXRQChr10g0304481 Helianthus annuus HOM05D001170 ORTHO05D002759 5.2e-08 60.5 38 73.7
EL10Ac1g01218 Beta vulgaris HOM05D001170 ORTHO05D002759 8.9e-08 59.7 38 65.8
ATR0724G012 Amborella trichopoda HOM05D001170 ORTHO05D002759 1.2e-07 59.3 38 57.9
HPP92_006344 Vanilla planifolia HOM05D001170 ORTHO05D002759 1.5e-07 58.9 37 62.2
ECA248G2451 Erigeron canadensis HOM05D001170 ORTHO05D002666 2.0e-07 58.5 38 71.1
Os01g0530400 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 2.6e-07 58.2 38 63.2
Pp3c26_14030 Physcomitrium patens HOM05D001170 ORTHO05D002759 2.6e-07 58.2 38 57.9
Aqoxy1G02463 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 3.4e-07 57.8 38 65.8
Aqoxy1G03999 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 3.4e-07 57.8 38 65.8
Hma1.2p1_0515F.1_g170270 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 3.4e-07 57.8 52 57.7
Zm00001eb336840 Zea mays HOM05D001170 ORTHO05D002759 4.4e-07 57.4 38 65.8
ATR0767G165 Amborella trichopoda HOM05D001170 ORTHO05D002759 5.8e-07 57.0 38 60.5
SMO340G0324 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 5.8e-07 57.0 33 63.6
Sabra03G0034800 Salix brachista HOM05D001170 ORTHO05D002759 7.6e-07 56.6 37 59.5
Cpa.g.sc10.223 Carica papaya HOM05D001170 ORTHO05D002759 9.9e-07 56.2 47 55.3
Os01g0174900 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 1.3e-06 55.8 38 60.5
Potri.003G060600 Populus trichocarpa HOM05D001170 ORTHO05D002759 2.2e-06 55.1 37 54.1
Mapoly0037s0022 Marchantia polymorpha HOM05D001170 ORTHO05D002759 3.7e-06 54.3 37 56.8
AagrBONN_evm.TU.Sc2ySwM_362.1014 Anthoceros agrestis HOM05D001170 ORTHO05D002759 6.4e-06 53.5 37 54.1
CSS0038997 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 6.4e-06 53.5 27 85.2
Zm00001eb424600 Zea mays HOM05D001170 ORTHO05D002759 8.4e-06 53.1 37 56.8


User provided reference genes

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