Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.1e-122 441.8 220 100.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.4e-111 405.6 220 89.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 7.8e-110 400.6 220 89.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 6.2e-107 391.0 217 88.0
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 7.3e-100 367.5 220 80.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.1e-98 362.1 220 81.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.9e-96 355.5 220 77.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.2e-95 352.1 220 80.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.1e-90 335.5 249 68.7
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.2e-89 333.6 249 68.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 5.8e-89 331.3 218 74.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 7.6e-89 330.9 217 74.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.9e-87 326.2 289 61.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 5.5e-87 324.7 220 69.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 5.5e-87 324.7 217 72.8
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.5e-86 322.0 220 70.0
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.3e-85 319.3 220 70.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.3e-85 319.3 217 71.4
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.9e-85 318.5 217 68.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 5.6e-84 314.7 220 67.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 7.4e-84 314.3 211 73.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.7e-83 312.0 217 67.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 8.1e-83 310.8 213 72.8
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.8e-82 309.7 218 70.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-81 307.0 217 67.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-81 307.0 217 67.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-81 305.8 217 66.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.4e-81 305.4 217 66.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.8e-81 304.7 214 68.7
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.9e-80 301.6 218 64.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 6.5e-80 301.2 221 63.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.5e-80 301.2 219 66.2
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 8.4e-80 300.8 220 65.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-79 300.4 215 66.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.4e-79 300.1 221 63.3
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.4e-79 300.1 221 67.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.4e-79 300.1 217 65.9
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.2e-79 298.9 217 66.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.2e-79 298.5 220 65.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 7.1e-79 297.7 217 65.4
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 9.3e-79 297.4 216 66.7
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.6e-78 296.6 219 64.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.6e-78 296.6 217 63.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.1e-78 296.2 226 64.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 7.9e-78 294.3 220 62.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.0e-77 293.9 220 62.7
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.0e-77 293.9 217 65.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.3e-77 293.5 234 63.7
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.0e-77 292.4 220 65.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.0e-77 292.4 220 61.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.9e-77 292.0 217 64.1
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.1e-77 291.6 217 63.1
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 5.1e-77 291.6 217 64.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 8.7e-77 290.8 220 65.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.1e-76 290.4 217 61.3
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.3e-76 288.9 220 61.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.3e-75 287.0 216 65.3
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.3e-75 287.0 217 62.7
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.6e-75 286.6 217 64.5
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.6e-75 286.6 217 62.2
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.1e-75 286.2 212 66.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.8e-75 285.8 217 62.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 3.7e-75 285.4 219 62.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.7e-75 285.4 217 61.8
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.6e-73 279.3 217 62.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.4e-73 278.9 221 60.2
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 4.5e-73 278.5 217 59.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 5.9e-73 278.1 221 60.2
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 7.6e-73 277.7 220 57.7
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.3e-72 276.9 220 63.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.7e-72 276.6 215 58.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-72 276.2 221 60.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.4e-71 273.5 218 57.8
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.4e-71 273.5 217 58.1
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.4e-71 273.5 298 51.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.9e-71 273.1 216 57.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.5e-71 272.7 220 60.9
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.3e-71 270.8 221 57.9
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.2e-70 270.4 217 58.5
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-70 268.9 221 58.4
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.6e-70 268.5 253 54.9
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.1e-70 268.1 220 56.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 6.1e-70 268.1 239 57.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.9e-70 267.7 227 59.9
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.3e-69 266.2 221 59.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 5.1e-69 265.0 218 59.2
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 5.1e-69 265.0 217 58.1
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.7e-69 264.2 252 53.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.5e-68 263.5 218 58.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.5e-68 262.7 221 56.1
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-68 262.3 221 57.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 3.3e-68 262.3 243 53.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.3e-68 261.9 221 58.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 7.4e-68 261.2 216 58.3
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 7.4e-68 261.2 221 55.7
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-67 260.4 221 57.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-67 260.0 213 59.2
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 3.7e-67 258.8 217 57.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.8e-67 258.5 244 55.7
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.2e-67 257.7 221 56.6
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-66 257.3 221 57.5
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.4e-66 256.9 216 57.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.4e-66 256.1 222 55.9
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 5.3e-66 255.0 222 55.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 5.3e-66 255.0 219 54.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 6.9e-66 254.6 221 56.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-65 253.4 213 57.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.0e-64 248.4 291 47.4
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.5e-64 248.1 217 59.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.6e-62 243.4 217 53.5
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-62 242.3 193 58.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.6e-62 241.9 215 55.8
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.0e-61 239.2 216 56.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.0e-61 239.2 216 53.7
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 6.7e-61 238.0 215 53.5
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 3.3e-60 235.7 217 54.8
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 7.4e-60 234.6 192 58.3
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-59 233.8 214 56.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.4e-58 229.6 216 55.1
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.1e-58 229.2 200 58.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.1e-58 229.2 215 53.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.1e-58 228.8 216 54.2
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 4.5e-57 225.3 215 52.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 7.7e-57 224.6 215 52.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.7e-56 223.4 153 70.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 6.5e-56 221.5 216 52.8
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-55 219.5 215 51.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.2e-55 219.2 216 52.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.4e-52 208.8 155 63.2
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.7e-52 207.6 155 62.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.5e-49 199.1 155 61.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.0e-48 197.6 228 46.9
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.1e-47 194.1 194 50.0
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.0e-44 183.3 132 66.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 9.7e-44 181.0 220 44.1
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.2e-43 177.9 143 61.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.5e-41 172.6 240 43.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.9e-41 171.8 124 66.1
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.7e-38 162.2 133 61.7
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 7.5e-36 154.8 214 42.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-35 153.7 127 59.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 3.7e-35 152.5 120 62.5
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 8.3e-35 151.4 134 54.5
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 4.1e-34 149.1 133 58.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.1e-34 149.1 137 56.2
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-33 146.7 120 59.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.0e-33 146.7 133 57.9
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.0e-32 144.4 231 38.1
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-31 141.0 148 49.3
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.6e-30 136.0 103 63.1
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.1e-30 135.2 180 40.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.6e-28 129.8 185 41.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.8e-26 123.6 168 42.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 7.0e-26 121.7 90 63.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.5e-25 119.0 104 55.8
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.6e-23 112.1 83 63.9
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.7e-22 109.0 76 65.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 8.0e-22 108.2 85 67.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-18 97.4 90 62.2
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.7e-17 93.2 85 52.9
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.9e-15 87.0 171 38.6
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.3e-13 80.1 100 46.0
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.7e-11 73.9 189 28.6
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.4e-10 70.9 160 31.2
TPR.G13891 Trifolium pratense HOM05D001860 ORTHO05D004922 1.4e-10 70.9 36 94.4
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 6.0e-09 65.5 174 29.9
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.0e-08 64.7 148 28.4
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.1e-07 61.2 77 45.5
Hma1.2p1_1598F.1_g293010 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 2.5e-07 60.1 199 28.1
Hma1.2p1_1598F.1_g292986 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 3.3e-07 59.7 199 28.1
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.6e-07 58.9 59 47.5
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 1.6e-06 57.4 128 32.0
Hma1.2p1_1598F.1_g293000 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 4.7e-06 55.8 144 29.9
Hma1.2p1_1598F.1_g293009 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 6.2e-06 55.5 144 29.9
Hma1.2p1_1598F.1_g293016 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 6.2e-06 55.5 144 29.9
Hma1.2p1_1598F.1_g292983 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 8.1e-06 55.1 144 29.9


User provided reference genes

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