Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36134 Trifolium pratense HOM05D000091 ORTHO05D412723 1.3e-35 152.5 80 100.0
Medtr2g084595 Medicago truncatula HOM05D000091 ORTHO05D008877 1.4e-32 142.5 80 92.5
Ca_01689_v3 Cicer arietinum L. HOM05D000091 ORTHO05D008877 1.2e-31 139.4 80 90.0
Psat5g254040 Pisum sativum HOM05D000091 ORTHO05D008877 2.9e-30 134.8 80 85.0
Lj3g0009837 Lotus japonicus HOM05D000091 ORTHO05D008877 2.5e-26 121.7 80 78.8
Glyma.12G180400 Glycine max HOM05D000091 ORTHO05D008877 3.3e-26 121.3 80 77.5
VMungo1322G0001 Vigna mungo HOM05D000091 ORTHO05D008877 2.2e-25 118.6 80 76.2
Glyma.13G320400 Glycine max HOM05D000091 ORTHO05D008877 8.2e-25 116.7 80 73.8
Phvul.005G128400 Phaseolus vulgaris HOM05D000091 ORTHO05D008877 1.5e-23 112.5 80 73.8
Lalb_Chr22g0350541 Lupinus albus HOM05D000091 ORTHO05D008877 1.7e-22 109.0 76 76.3
Potri.009G150500 Populus trichocarpa HOM05D000091 ORTHO05D008877 2.2e-22 108.6 79 68.4
arahy.Tifrunner.gnm1.ann1.I2DX8F Arachis hypogaea HOM05D000091 ORTHO05D008877 2.9e-22 108.2 80 70.0
arahy.Tifrunner.gnm1.ann1.Z1V2E3 Arachis hypogaea HOM05D000091 ORTHO05D008877 2.9e-22 108.2 80 70.0
Sabra09G0119300 Salix brachista HOM05D000091 ORTHO05D008877 5.0e-22 107.5 79 68.4
Potri.004G189800 Populus trichocarpa HOM05D000091 ORTHO05D008877 6.5e-22 107.1 79 69.6
Manes.04G010500 Manihot esculenta HOM05D000091 ORTHO05D008877 4.7e-20 100.9 79 63.3
Ciclev10028013m.g Citrus clementina HOM05D000091 ORTHO05D008877 1.5e-18 95.9 79 60.8
Oeu050170.1 Olea europaea HOM05D000091 ORTHO05D008877 2.0e-18 95.5 80 61.2
Atru.chr3.3404 Acer truncatum HOM05D000091 ORTHO05D008877 2.6e-18 95.1 79 60.8
GSVIVG01031416001 Vitis vinifera HOM05D000091 ORTHO05D008877 3.3e-18 94.7 79 58.2
Duzib168G0732 Durio zibethinus HOM05D000091 ORTHO05D008877 2.2e-17 92.0 79 62.0
COL.COLO4_19271 Corchorus olitorius HOM05D000091 ORTHO05D008877 2.8e-17 91.7 79 62.0
Dinv29409 Davidia involucrata HOM05D000091 ORTHO05D008877 2.8e-17 91.7 79 59.5
Thecc.09G293500 Theobroma cacao HOM05D000091 ORTHO05D008877 2.8e-17 91.7 79 62.0
CiPaw.13G142200 Carya illinoinensis HOM05D000091 ORTHO05D008877 3.7e-17 91.3 79 59.5
QL01p014042 Quercus lobata HOM05D000091 ORTHO05D008877 3.7e-17 91.3 79 63.3
CSS0043937 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D008877 6.3e-17 90.5 88 56.8
TWI31G1462 Tripterygium wilfordii HOM05D000091 ORTHO05D008877 6.3e-17 90.5 79 60.8
FvH4_3g30070 Fragaria vesca HOM05D000091 ORTHO05D008877 1.1e-16 89.7 79 59.5
FAN11G2047 Fragaria x ananassa HOM05D000091 ORTHO05D008877 1.1e-16 89.7 79 59.5
Haze_23468 Corylus avellana HOM05D000091 ORTHO05D008877 1.4e-16 89.4 78 59.0
Hma1.2p1_0147F.1_g065810 Hydrangea macrophylla HOM05D000091 ORTHO05D008877 1.8e-16 89.0 79 58.2
Hma1.2p1_0864F.1_g230080 Hydrangea macrophylla HOM05D000091 ORTHO05D008877 1.8e-16 89.0 79 58.2
Prupe.6G117000 Prunus persica HOM05D000091 ORTHO05D008877 1.8e-16 89.0 79 58.2
Rhsim13G0104200 Rhododendron simsii HOM05D000091 ORTHO05D008877 2.4e-16 88.6 79 58.2
Gohir.A07G106900 Gossypium hirsutum HOM05D000091 ORTHO05D008877 3.1e-16 88.2 79 60.8
Gohir.D07G110800 Gossypium hirsutum HOM05D000091 ORTHO05D008877 3.1e-16 88.2 79 60.8
Gorai.001G119000 Gossypium raimondii HOM05D000091 ORTHO05D008877 3.1e-16 88.2 79 60.8
Solyc11g066730.2 Solanum lycopersicum HOM05D000091 ORTHO05D008877 3.1e-16 88.2 79 60.8
Actinidia24172 Actinidia chinensis HOM05D000091 ORTHO05D008877 4.1e-16 87.8 79 59.5
Dinv12536 Davidia involucrata HOM05D000091 ORTHO05D008877 4.1e-16 87.8 79 60.8
Eucgr.J00414 Eucalyptus grandis HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 59.5
FAN16G0574 Fragaria x ananassa HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 58.2
FAN21G1074 Fragaria x ananassa HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 58.2
FAN25G1498 Fragaria x ananassa HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 58.2
Nitab4.5_0000442g0210 Nicotiana tabacum HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 58.2
Sopen11g026470 Solanum pennellii HOM05D000091 ORTHO05D008877 5.3e-16 87.4 79 62.0
PGSC0003DMG400000434 Solanum tuberosum HOM05D000091 ORTHO05D008877 5.3e-16 87.4 74 62.2
TAR623G1122 Trochodendron aralioides HOM05D000091 ORTHO05D008877 9.1e-16 86.7 79 55.7
Cc01_g09960 Coffea canephora HOM05D000091 ORTHO05D008877 1.2e-15 86.3 79 55.7
Aqoxy2G01499 Aquilegia oxysepala HOM05D000091 ORTHO05D008877 1.6e-15 85.9 79 57.0
Nitab4.5_0002571g0050 Nicotiana tabacum HOM05D000091 ORTHO05D008877 2.0e-15 85.5 79 58.2
RcHm_v2.0_Chr5g0055801 Rosa chinensis HOM05D000091 ORTHO05D008877 2.0e-15 85.5 79 57.0
Actinidia07203 Actinidia chinensis HOM05D000091 ORTHO05D008877 3.5e-15 84.7 77 57.1
Cpa.g.sc47.44 Carica papaya HOM05D000091 ORTHO05D008877 4.5e-15 84.3 79 54.4
PSO384G2078 Papaver somniferum HOM05D000091 ORTHO05D008877 4.5e-15 84.3 79 55.7
Peaxi162Scf00789g00113 Petunia axillaris HOM05D000091 ORTHO05D008877 1.0e-14 83.2 79 55.7
EL10Ac9g21050 Beta vulgaris HOM05D000091 ORTHO05D008877 8.5e-14 80.1 79 53.2
Lj1C218G4 Lonicera japonica HOM05D000091 ORTHO05D008877 8.5e-14 80.1 79 53.2
arahy.Tifrunner.gnm1.ann1.JAH0YS Arachis hypogaea HOM05D000091 ORTHO05D008877 1.1e-13 79.7 80 56.2
MD11G1154700 Malus domestica HOM05D000091 ORTHO05D008877 1.9e-13 79.0 69 56.5
arahy.Tifrunner.gnm1.ann1.CV534K Arachis hypogaea HOM05D000091 ORTHO05D008877 3.2e-13 78.2 80 55.0
MSTRG.17739 Avicennia marina HOM05D000091 ORTHO05D008877 3.2e-13 78.2 81 59.3
AUR62023965 Chenopodium quinoa HOM05D000091 ORTHO05D008877 3.2e-13 78.2 79 53.2
PSO339G3972 Papaver somniferum HOM05D000091 ORTHO05D008877 4.2e-13 77.8 80 53.8
AUR62031765 Chenopodium quinoa HOM05D000091 ORTHO05D008877 5.5e-13 77.4 79 51.9
SalBow3G4425 Salvia bowleyana HOM05D000091 ORTHO05D008877 7.2e-13 77.0 80 56.2
PGR119G2564 Punica granatum HOM05D000091 ORTHO05D008877 2.7e-12 75.1 81 56.8
Lalb_Chr01g0004691 Lupinus albus HOM05D000091 ORTHO05D008877 3.6e-12 74.7 82 54.9
DCAR_018749 Daucus carota HOM05D000091 ORTHO05D008877 8.0e-12 73.6 79 45.6
MD03G1132400 Malus domestica HOM05D000091 ORTHO05D008877 8.0e-12 73.6 80 50.0
CAN.G644.43 Capsicum annuum HOM05D000091 ORTHO05D008877 1.0e-11 73.2 53 66.0
Migut.N02524 Erythranthe guttata HOM05D000091 ORTHO05D008877 1.0e-11 73.2 81 56.8
vmacro03228 Vaccinium macrocarpon HOM05D000091 ORTHO05D008877 1.4e-11 72.8 71 56.3
Sed0004475 Sechium edule HOM05D000091 ORTHO05D008877 5.2e-11 70.9 78 50.0
Gohir.D09G091700 Gossypium hirsutum HOM05D000091 ORTHO05D008877 4.4e-10 67.8 77 49.4
Gorai.006G108300 Gossypium raimondii HOM05D000091 ORTHO05D008877 4.4e-10 67.8 77 49.4
Aa31LG4G14270 Aethionema arabicum HOM05D000091 ORTHO05D008877 2.8e-09 65.1 81 53.1
Ah.01g016690 Amaranthus hybridus HOM05D000091 ORTHO05D008877 1.1e-08 63.2 81 45.7
ECA248G3351 Erigeron canadensis HOM05D000091 ORTHO05D008877 1.1e-08 63.2 76 47.4
Sp5g16380 Schrenkiella parvula HOM05D000091 ORTHO05D008877 3.1e-08 61.6 85 52.9
AT3G44820 Arabidopsis thaliana HOM05D000091 ORTHO05D008877 5.3e-08 60.8 85 52.9
Ah.01g004680 Amaranthus hybridus HOM05D000091 ORTHO05D008877 7.0e-08 60.5 78 47.4
AL5G23290 Arabidopsis lyrata HOM05D000091 ORTHO05D008877 9.1e-08 60.1 85 52.9
THA.LOC104810891 Tarenaya hassleriana HOM05D000091 ORTHO05D008877 1.6e-07 59.3 83 51.8
Carub.0005s1057 Capsella rubella HOM05D000091 ORTHO05D008877 4.5e-07 57.8 81 49.4
Gohir.A09G091800 Gossypium hirsutum HOM05D000091 ORTHO05D008877 4.5e-07 57.8 79 43.0
Thhalv10002437m.g Eutrema salsugineum HOM05D000091 ORTHO05D008877 1.3e-06 56.2 86 48.8
CARHR151220 Cardamine hirsuta HOM05D000091 ORTHO05D008877 1.7e-06 55.8 84 50.0
Lsat_1_v5_gn_1_61900 Lactuca sativa HOM05D000091 ORTHO05D008877 1.7e-06 55.8 81 44.4


User provided reference genes

Program Settings