Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.2e-44 181.4 93 100.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-41 172.2 93 94.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-35 152.9 83 91.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-27 126.3 83 73.5
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 7.3e-25 117.1 90 64.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.8e-24 115.2 91 64.8
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.8e-23 112.5 91 61.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.1e-23 111.7 90 60.0
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.5e-22 109.4 90 61.1
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 5.8e-22 107.5 91 61.5
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 7.6e-22 107.1 77 64.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.9e-21 105.1 77 64.9
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 3.7e-21 104.8 90 55.6
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 4.9e-21 104.4 88 56.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.1e-20 103.2 77 64.9
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.4e-20 102.8 93 58.1
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 4.1e-20 101.3 83 62.7
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.6e-19 99.4 82 61.0
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.6e-19 99.4 91 59.3
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 2.1e-19 99.0 84 61.9
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 2.7e-19 98.6 79 60.8
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.6e-19 97.8 88 58.0
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 6.0e-19 97.4 79 63.3
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 7.8e-19 97.1 89 57.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.0e-18 96.7 85 57.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.3e-18 96.3 75 62.7
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.3e-18 96.3 75 64.0
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.3e-18 96.3 88 56.8
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.3e-18 96.3 88 56.8
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.3e-18 96.3 88 56.8
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.7e-18 95.9 92 54.3
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-18 95.9 78 59.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-18 95.9 77 58.4
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.7e-18 95.9 67 65.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.3e-18 95.5 66 63.6
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.3e-18 95.5 66 63.6
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.3e-18 95.5 89 51.7
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 2.3e-18 95.5 78 60.3
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.3e-18 95.5 82 56.1
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 3.0e-18 95.1 68 63.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 3.0e-18 95.1 89 56.2
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.9e-18 94.7 92 54.3
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 5.1e-18 94.4 76 60.5
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.1e-18 94.4 76 60.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.1e-18 94.4 76 60.5
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 5.1e-18 94.4 87 59.8
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 8.6e-18 93.6 66 63.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 8.6e-18 93.6 87 57.5
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.1e-17 93.2 92 52.2
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.1e-17 93.2 92 52.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.1e-17 93.2 67 62.7
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.1e-17 93.2 76 60.5
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.5e-17 92.8 82 54.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.9e-17 92.4 88 54.5
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.9e-17 92.4 69 59.4
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.9e-17 92.4 81 55.6
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.5e-17 92.0 89 53.9
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.5e-17 92.0 79 58.2
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.3e-17 91.7 89 52.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 3.3e-17 91.7 91 56.0
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 3.3e-17 91.7 92 52.2
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 4.3e-17 91.3 82 52.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 4.3e-17 91.3 89 52.8
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 4.3e-17 91.3 89 52.8
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 5.6e-17 90.9 66 62.1
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.3e-17 90.5 77 58.4
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 7.3e-17 90.5 89 51.7
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 7.3e-17 90.5 90 55.6
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.6e-16 89.4 66 60.6
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.1e-16 89.0 92 50.0
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.1e-16 89.0 66 62.1
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.8e-16 88.6 77 54.5
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.6e-16 88.2 66 57.6
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.7e-16 87.8 67 61.2
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 4.7e-16 87.8 78 55.1
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 4.7e-16 87.8 78 55.1
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 6.2e-16 87.4 63 63.5
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 8.1e-16 87.0 87 49.4
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 8.1e-16 87.0 89 50.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-15 86.7 89 48.3
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.4e-15 86.3 79 48.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.8e-15 85.9 89 49.4
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.8e-15 85.9 58 65.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.4e-15 85.5 88 47.7
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.4e-15 85.5 82 48.8
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 2.4e-15 85.5 78 55.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.4e-15 85.5 78 55.1
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.4e-15 85.5 78 55.1
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.1e-15 85.1 79 53.2
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.1e-15 85.1 76 53.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.0e-15 84.7 89 49.4
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 8.9e-15 83.6 72 59.7
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 8.9e-15 83.6 79 51.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.2e-14 83.2 92 47.8
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.5e-14 82.8 76 52.6
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.5e-14 82.8 87 49.4
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.6e-14 82.0 89 50.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.6e-14 80.5 65 52.3
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 9.9e-14 80.1 90 48.9
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 9.9e-14 80.1 90 48.9
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.7e-13 79.3 65 53.8
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.7e-13 79.3 92 47.8
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 3.8e-13 78.2 91 47.3
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.9e-13 77.8 91 42.9
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.1e-12 76.6 55 61.8
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.2e-12 75.1 80 43.8
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 7.1e-12 73.9 81 43.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 9.3e-12 73.6 101 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.7e-11 72.0 77 41.6
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 6.0e-11 70.9 75 50.7
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.0e-10 70.1 61 49.2
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.7e-10 69.3 80 40.0
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.3e-09 65.1 59 52.5
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 5.6e-09 64.3 57 43.9
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 6.2e-08 60.8 58 44.8
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.4e-07 59.7 86 37.2
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.2e-06 56.6 140 29.3


User provided reference genes

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