Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 9.8e-22 105.9 54 100.0
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 2.2e-21 104.8 54 98.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-21 104.8 54 98.1
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-21 104.8 54 98.1
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.1e-20 102.4 54 96.3
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 9.1e-20 99.4 54 90.7
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 9.1e-20 99.4 54 90.7
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.6e-19 98.6 54 90.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.6e-19 98.6 54 90.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.6e-19 98.6 54 90.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.0e-19 98.2 54 92.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.5e-19 97.4 54 92.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 3.5e-19 97.4 54 90.7
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 7.7e-19 96.3 54 88.9
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.0e-18 95.9 54 88.9
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.3e-18 95.5 54 88.9
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.3e-18 95.5 54 88.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.3e-18 95.5 54 87.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.3e-18 95.5 54 87.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.3e-18 95.5 54 88.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.7e-18 95.1 54 88.9
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.7e-18 95.1 54 88.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.7e-18 95.1 54 90.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.3e-18 94.7 54 87.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.3e-18 94.7 54 87.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.3e-18 94.7 54 87.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.3e-18 94.7 54 87.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.3e-18 94.7 54 87.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.9e-18 94.4 54 87.0
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.8e-18 94.0 54 87.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 5.0e-18 93.6 54 87.0
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 5.0e-18 93.6 54 88.9
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 5.0e-18 93.6 54 87.0
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 5.0e-18 93.6 54 87.0
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.0e-18 93.6 54 88.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 6.6e-18 93.2 54 85.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 6.6e-18 93.2 54 87.0
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 6.6e-18 93.2 54 85.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 8.6e-18 92.8 54 85.2
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 8.6e-18 92.8 54 85.2
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.6e-18 92.8 54 85.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.6e-18 92.8 54 85.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 8.6e-18 92.8 54 83.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 83.3
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 85.2
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 85.2
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 83.3
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 85.2
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.1e-17 92.4 54 85.2
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-17 92.0 54 85.2
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.5e-17 92.0 54 87.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-17 92.0 54 85.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.5e-17 92.0 54 83.3
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.9e-17 91.7 54 83.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.9e-17 91.7 54 83.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.9e-17 91.7 54 83.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.9e-17 91.7 54 83.3
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.5e-17 91.3 54 85.2
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.5e-17 91.3 54 85.2
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.5e-17 91.3 54 85.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.5e-17 91.3 54 83.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 85.2
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 81.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 81.5
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 83.3
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 81.5
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 81.5
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.3e-17 90.9 54 83.3
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 4.2e-17 90.5 54 81.5
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.2e-17 90.5 54 87.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.2e-17 90.5 54 83.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 4.2e-17 90.5 54 81.5
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.2e-17 90.5 54 83.3
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.5e-17 90.1 54 81.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.5e-17 90.1 54 83.3
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 5.5e-17 90.1 53 81.1
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.5e-17 90.1 53 81.1
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 7.2e-17 89.7 54 81.5
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 7.2e-17 89.7 54 85.2
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 9.5e-17 89.4 54 77.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 9.5e-17 89.4 54 81.5
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-16 89.0 54 85.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.6e-16 88.6 54 77.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.6e-16 88.6 54 81.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.1e-16 88.2 54 81.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.8e-16 87.8 54 79.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 3.6e-16 87.4 51 86.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.6e-16 87.4 54 81.5
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 8.0e-16 86.3 54 72.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.0e-16 86.3 52 82.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.0e-16 86.3 52 82.7
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.0e-15 85.9 54 81.5
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.0e-15 85.9 54 77.8
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.4e-15 85.5 52 82.7
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-15 84.3 54 79.6
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.0e-15 84.0 51 82.4
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.0e-15 84.0 54 74.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.9e-15 82.8 54 70.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.2e-14 82.4 51 80.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.6e-14 81.3 54 74.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.6e-14 81.3 54 68.5
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.3e-13 79.0 54 72.2
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.7e-13 77.4 49 75.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.7e-13 77.4 54 72.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 3.7e-13 77.4 54 68.5
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 4.9e-13 77.0 54 68.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 4.9e-13 77.0 54 68.5
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 3.2e-12 74.3 54 64.8
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 4.1e-12 73.9 54 63.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 5.0e-10 67.0 52 67.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-08 62.0 52 65.4
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 4.7e-08 60.5 50 64.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.4e-07 58.9 54 48.1
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-07 58.9 54 46.3
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-07 58.9 54 48.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-07 58.9 54 48.1
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.4e-07 58.9 54 51.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-07 58.5 54 46.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.0e-07 57.4 54 48.1
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-06 55.8 36 75.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.4e-06 54.3 36 72.2
QL02p056495 Quercus lobata HOM05D001920 ORTHO05D005408 3.4e-06 54.3 37 73.0


User provided reference genes

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