Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 4.5e-19 97.1 53 100.0
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 9.9e-19 95.9 53 98.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 8.7e-15 82.8 53 83.0
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.1e-14 82.4 53 84.9
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 1.5e-14 82.0 53 83.0
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 4.3e-14 80.5 53 83.0
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 4.3e-14 80.5 53 81.1
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 5.6e-14 80.1 53 81.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.6e-13 78.6 53 79.2
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 4.8e-13 77.0 53 77.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 8.1e-13 76.3 53 75.5
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 8.1e-13 76.3 53 73.6
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.1e-12 75.9 53 77.4
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.1e-12 75.9 53 77.4
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.4e-12 74.7 53 77.4
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.4e-12 74.7 53 77.4
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 3.1e-12 74.3 53 73.6
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 4.0e-12 73.9 53 75.5
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.0e-12 73.9 53 73.6
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.3e-12 73.6 53 73.6
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 5.3e-12 73.6 53 71.7
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 6.9e-12 73.2 53 75.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 6.9e-12 73.2 53 73.6
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 9.0e-12 72.8 53 73.6
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.0e-11 71.6 53 71.7
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.6e-11 71.2 53 69.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 3.4e-11 70.9 53 71.7
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 3.4e-11 70.9 51 74.5
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.4e-11 70.9 53 69.8
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.8e-11 70.1 53 69.8
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 5.8e-11 70.1 53 67.9
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.8e-11 70.1 53 69.8
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.6e-11 69.7 53 71.7
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 7.6e-11 69.7 53 71.7
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 7.6e-11 69.7 53 67.9
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 9.9e-11 69.3 53 73.6
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 9.9e-11 69.3 53 69.8
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-10 68.9 53 69.8
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.2e-10 68.2 53 66.0
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 2.2e-10 68.2 53 69.8
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 2.2e-10 68.2 53 69.8
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 2.9e-10 67.8 53 67.9
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 2.9e-10 67.8 48 72.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 3.8e-10 67.4 53 64.2
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.8e-10 67.4 53 69.8
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.9e-10 67.0 53 67.9
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.9e-10 67.0 53 67.9
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 4.9e-10 67.0 53 67.9
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 6.4e-10 66.6 42 83.3
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 6.4e-10 66.6 53 66.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 8.4e-10 66.2 53 69.8
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 8.4e-10 66.2 53 66.0
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.1e-09 65.9 53 66.0
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.1e-09 65.9 53 67.9
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.1e-09 65.9 53 67.9
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.4e-09 65.5 53 66.0
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 1.4e-09 65.5 53 64.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.4e-09 65.5 53 67.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.4e-09 64.7 53 67.9
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.4e-09 64.7 53 67.9
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.4e-09 64.7 53 60.4
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.2e-09 64.3 53 62.3
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 5.5e-09 63.5 53 64.2
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.5e-09 63.5 53 64.2
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.5e-09 63.5 53 64.2
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 5.5e-09 63.5 53 64.2
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.5e-09 63.5 53 64.2
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 7.1e-09 63.2 53 64.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.2e-08 62.4 53 62.3
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.2e-08 62.4 53 60.4
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.2e-08 62.4 53 56.6
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 1.6e-08 62.0 53 66.0
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.6e-08 62.0 53 64.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.6e-08 62.0 53 67.9
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.6e-08 62.0 53 62.3
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 2.1e-08 61.6 53 60.4
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-08 61.6 53 60.4
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 2.1e-08 61.6 53 60.4
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 2.1e-08 61.6 43 74.4
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.7e-08 61.2 53 60.4
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 2.7e-08 61.2 53 60.4
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 2.7e-08 61.2 53 60.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 3.5e-08 60.8 53 62.3
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 6.0e-08 60.1 53 60.4
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.0e-08 60.1 53 60.4
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 6.0e-08 60.1 53 60.4
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 7.9e-08 59.7 53 66.0
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 7.9e-08 59.7 53 62.3
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.9e-08 59.7 53 58.5
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.0e-07 59.3 53 62.3
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 1.0e-07 59.3 53 58.5
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.0e-07 59.3 56 60.7
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.0e-07 59.3 53 62.3
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 58.5
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 56.6
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 58.5
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 58.5
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 58.5
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 62.3
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-07 58.9 53 58.5
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.0e-07 57.8 53 60.4
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 3.0e-07 57.8 53 60.4
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 3.9e-07 57.4 49 63.3
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.1e-07 57.0 53 56.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.1e-07 57.0 53 56.6
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.1e-07 57.0 53 62.3
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 6.7e-07 56.6 53 56.6
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.7e-07 56.6 53 62.3
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 6.7e-07 56.6 53 60.4
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 6.7e-07 56.6 43 65.1
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 8.7e-07 56.2 53 52.8
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 8.7e-07 56.2 53 56.6
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.1e-06 55.8 53 54.7
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.5e-06 55.5 53 60.4
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.9e-06 55.1 53 50.9
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.9e-06 55.1 53 54.7
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 2.5e-06 54.7 53 52.8
Lj4g0016224 Lotus japonicus HOM05D003660 ORTHO05D003415 3.3e-06 54.3 34 73.5
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 3.3e-06 54.3 53 54.7
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.3e-06 53.9 53 52.8
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 7.4e-06 53.1 53 52.8
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 9.6e-06 52.8 54 53.7
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 9.6e-06 52.8 53 54.7
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 9.6e-06 52.8 53 52.8


User provided reference genes

Program Settings