Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36101 Trifolium pratense HOM05D000247 ORTHO05D000288 5.3e-19 96.7 48 100.0
TPR.G7414 Trifolium pratense HOM05D000247 ORTHO05D000288 5.3e-19 96.7 48 100.0
Medtr2g082590 Medicago truncatula HOM05D000247 ORTHO05D000288 7.1e-16 86.3 48 89.6
Psat5g249480 Pisum sativum HOM05D000247 ORTHO05D000288 7.1e-16 86.3 47 87.2
Glyma.13G286600 Glycine max HOM05D000247 ORTHO05D000288 1.2e-15 85.5 48 85.4
Glyma.12G215000 Glycine max HOM05D000247 ORTHO05D000288 3.5e-15 84.0 47 83.0
Lj3g0003664 Lotus japonicus HOM05D000247 ORTHO05D000288 7.9e-15 82.8 47 83.0
Phvul.005G090900 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 1.0e-14 82.4 47 78.7
VMungo1080G1163 Vigna mungo HOM05D000247 ORTHO05D000288 6.7e-14 79.7 47 78.7
Lj3g0009656 Lotus japonicus HOM05D000247 ORTHO05D000288 1.5e-13 78.6 47 74.5
PGR004G1780 Punica granatum HOM05D000247 ORTHO05D000288 1.5e-13 78.6 47 70.2
TPR.G25899 Trifolium pratense HOM05D000247 ORTHO05D000288 4.3e-13 77.0 47 74.5
arahy.Tifrunner.gnm1.ann1.7ZYB2E Arachis hypogaea HOM05D000247 ORTHO05D000288 5.6e-13 76.6 47 76.6
Medtr4g081380 Medicago truncatula HOM05D000247 ORTHO05D000288 1.3e-12 75.5 47 72.3
PGR004G0688 Punica granatum HOM05D000247 ORTHO05D000288 1.6e-12 75.1 45 71.1
Lalb_Chr01g0006131 Lupinus albus HOM05D000247 ORTHO05D000288 1.1e-11 72.4 47 68.1
Ca_18843_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 1.4e-11 72.0 42 78.6
Psat7g122160 Pisum sativum HOM05D000247 ORTHO05D000288 1.4e-11 72.0 47 68.1
Solyc02g079960.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 1.4e-11 72.0 47 66.0
Cc02_g11760 Coffea canephora HOM05D000247 ORTHO05D000288 1.8e-11 71.6 47 63.8
Nitab4.5_0002345g0090 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.4e-11 71.2 47 66.0
Nitab4.5_0009680g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.4e-11 71.2 47 68.1
Sopen02g024710 Solanum pennellii HOM05D000247 ORTHO05D000288 2.4e-11 71.2 47 66.0
Glyma.06G266700 Glycine max HOM05D000247 ORTHO05D000288 4.0e-11 70.5 47 68.1
Phvul.011G141400 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 4.0e-11 70.5 42 76.2
Sc17g0006940 Simmondsia chinensis HOM05D000247 ORTHO05D000288 4.0e-11 70.5 44 68.2
EL10Ac8g19917 Beta vulgaris HOM05D000247 ORTHO05D000288 5.3e-11 70.1 44 70.5
PGSC0003DMG400021716 Solanum tuberosum HOM05D000247 ORTHO05D000288 5.3e-11 70.1 47 63.8
Lalb_Chr22g0357091 Lupinus albus HOM05D000247 ORTHO05D000288 9.0e-11 69.3 45 73.3
Hund23533 Selenicereus undatus HOM05D000247 ORTHO05D000288 1.2e-10 68.9 46 71.7
CAN.G569.62 Capsicum annuum HOM05D000247 ORTHO05D000288 1.5e-10 68.6 47 63.8
QL05p077133 Quercus lobata HOM05D000247 ORTHO05D000288 2.0e-10 68.2 44 65.9
QL93p0073_1220 Quercus lobata HOM05D000247 ORTHO05D000288 2.0e-10 68.2 44 65.9
Duzib192G0716 Durio zibethinus HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 65.9
Eucgr.D00853 Eucalyptus grandis HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 65.9
Eucgr.L01943 Eucalyptus grandis HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 65.9
Gohir.D05G170700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 63.6
Gorai.009G175900 Gossypium raimondii HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 63.6
Potri.004G031700 Populus trichocarpa HOM05D000247 ORTHO05D000288 3.4e-10 67.4 44 65.9
CiPaw.09G080500 Carya illinoinensis HOM05D000247 ORTHO05D000288 4.5e-10 67.0 44 63.6
Lalb_Chr18g0060121 Lupinus albus HOM05D000247 ORTHO05D000288 4.5e-10 67.0 44 59.1
TPR.G32664 Trifolium pratense HOM05D000247 ORTHO05D000288 4.5e-10 67.0 45 64.4
CANSAT56G0019 Cannabis sativa HOM05D000247 ORTHO05D000288 5.8e-10 66.6 45 60.0
Cfa016411 Carpinus fangiana HOM05D000247 ORTHO05D000288 5.8e-10 66.6 44 63.6
Glyma.10G114400 Glycine max HOM05D000247 ORTHO05D000288 5.8e-10 66.6 42 69.0
GSVIVG01014587001 Vitis vinifera HOM05D000247 ORTHO05D000288 5.8e-10 66.6 47 66.0
Ah.09g237170 Amaranthus hybridus HOM05D001139 ORTHO05D000936 7.6e-10 66.2 44 65.9
AUR62014615 Chenopodium quinoa HOM05D000247 ORTHO05D000288 7.6e-10 66.2 45 66.7
Dinv22313 Davidia involucrata HOM05D000247 ORTHO05D000288 7.6e-10 66.2 47 66.0
Thecc.06G208700 Theobroma cacao HOM05D000247 ORTHO05D000288 7.6e-10 66.2 44 65.9
TWI38G1486 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 7.6e-10 66.2 45 64.4
Ciclev10017174m.g Citrus clementina HOM05D000247 ORTHO05D000288 1.0e-09 65.9 44 63.6
COL.COLO4_31688 Corchorus olitorius HOM05D000247 ORTHO05D000288 1.0e-09 65.9 44 65.9
Medtr2g010750 Medicago truncatula HOM05D000247 ORTHO05D000288 1.0e-09 65.9 45 64.4
TAR624G0987 Trochodendron aralioides HOM05D000247 ORTHO05D000288 1.0e-09 65.9 47 68.1
Ah.14g088470 Amaranthus hybridus HOM05D000141 ORTHO05D001968 1.3e-09 65.5 43 65.1
AL1G22630 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 1.3e-09 65.5 45 64.4
Duzib213G0045 Durio zibethinus HOM05D000247 ORTHO05D000288 1.3e-09 65.5 40 72.5
Gohir.A05G167700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.3e-09 65.5 44 63.6
Dinv03941 Davidia involucrata HOM05D000247 ORTHO05D000288 1.7e-09 65.1 44 68.2
VMungo0540G0926 Vigna mungo HOM05D000247 ORTHO05D000288 1.7e-09 65.1 45 62.2
AT1G11530 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 2.2e-09 64.7 45 62.2
CSS0037772 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 2.2e-09 64.7 44 63.6
Ca_00205_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 2.2e-09 64.7 45 60.0
Cpa.g.sc81.10 Carica papaya HOM05D000247 ORTHO05D000288 2.9e-09 64.3 44 65.9
Nn1g03710 Nelumbo nucifera HOM05D000247 ORTHO05D000288 2.9e-09 64.3 47 57.4
Carub.0001s1114 Capsella rubella HOM05D000247 ORTHO05D000288 3.8e-09 63.9 45 62.2
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 3.8e-09 63.9 44 61.4
Dinv17847 Davidia involucrata HOM05D000247 ORTHO05D000288 3.8e-09 63.9 45 60.0
Manes.16G017200 Manihot esculenta HOM05D000247 ORTHO05D000288 3.8e-09 63.9 44 56.8
Phvul.006G196500 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 4.9e-09 63.5 45 60.0
Glyma.15G063100 Glycine max HOM05D000247 ORTHO05D000288 6.5e-09 63.2 45 60.0
Nn1g06961 Nelumbo nucifera HOM05D000247 ORTHO05D000288 6.5e-09 63.2 47 59.6
CSS0035900 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 8.4e-09 62.8 44 61.4
CiPaw.10G066700 Carya illinoinensis HOM05D000247 ORTHO05D000288 8.4e-09 62.8 44 56.8
Duzib170G0151 Durio zibethinus HOM05D000247 ORTHO05D000288 8.4e-09 62.8 40 70.0
Glyma.12G136400 Glycine max HOM05D000247 ORTHO05D000288 8.4e-09 62.8 47 63.8
Sabra04G0018000 Salix brachista HOM05D000247 ORTHO05D000288 8.4e-09 62.8 44 61.4
vmacro11771 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 8.4e-09 62.8 42 69.0
BcaB08g37399 Brassica carinata HOM05D000247 ORTHO05D000288 1.1e-08 62.4 45 57.8
BcaC07g41779 Brassica carinata HOM05D000247 ORTHO05D000288 1.1e-08 62.4 45 57.8
Hma1.2p1_1682F.1_g297340 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 1.1e-08 62.4 45 60.0
PSO832G0793 Papaver somniferum HOM05D000247 ORTHO05D000288 1.1e-08 62.4 46 63.0
arahy.Tifrunner.gnm1.ann1.04AI4E Arachis hypogaea HOM05D000247 ORTHO05D000288 1.4e-08 62.0 44 52.3
arahy.Tifrunner.gnm1.ann1.W0U6J5 Arachis hypogaea HOM05D000247 ORTHO05D000288 1.4e-08 62.0 44 52.3
AUR62012586 Chenopodium quinoa HOM05D000247 ORTHO05D000288 1.4e-08 62.0 45 62.2
Lj6g0021886 Lotus japonicus HOM05D000247 ORTHO05D000288 1.4e-08 62.0 45 53.3
Peaxi162Scf00082g01211 Petunia axillaris HOM05D000247 ORTHO05D000288 1.4e-08 62.0 38 71.1
Potri.001G416500 Populus trichocarpa HOM05D000247 ORTHO05D000288 1.4e-08 62.0 44 59.1
Rhsim02G0114900 Rhododendron simsii HOM05D000247 ORTHO05D000288 1.4e-08 62.0 44 59.1
Sp1g10150 Schrenkiella parvula HOM05D000247 ORTHO05D000288 1.4e-08 62.0 46 54.3
GSVIVG01007337001 Vitis vinifera HOM05D000247 ORTHO05D000288 1.4e-08 62.0 43 62.8
ATR0762G027 Amborella trichopoda HOM05D000247 ORTHO05D000288 1.9e-08 61.6 43 62.8
MBI18_g26663_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D000288 1.9e-08 61.6 46 58.7
Actinidia05128 Actinidia chinensis HOM05D000247 ORTHO05D000288 2.5e-08 61.2 42 61.9
CARHR011800 Cardamine hirsuta HOM05D000247 ORTHO05D000288 2.5e-08 61.2 45 55.6
Thhalv10009112m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 2.5e-08 61.2 45 57.8
Nitab4.5_0003738g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.5e-08 61.2 44 61.4
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 2.5e-08 61.2 43 65.1
Thecc.07G055000 Theobroma cacao HOM05D000247 ORTHO05D000288 2.5e-08 61.2 40 72.5
BcaC07g41775 Brassica carinata HOM05D000247 ORTHO05D000288 3.2e-08 60.8 45 55.6
C08p48160 Brassica napus HOM05D000247 ORTHO05D000288 3.2e-08 60.8 45 55.6
BolC8t52349H Brassica oleracea HOM05D000247 ORTHO05D000288 3.2e-08 60.8 45 55.6
PSO210G3616 Papaver somniferum HOM05D000247 ORTHO05D000288 3.2e-08 60.8 46 60.9
CSS0044574 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 4.2e-08 60.5 43 60.5
Migut.H01863 Erythranthe guttata HOM05D000247 ORTHO05D000288 4.2e-08 60.5 42 61.9
MD10G1311900 Malus domestica HOM05D000247 ORTHO05D000288 4.2e-08 60.5 44 59.1
Peaxi162Scf00678g00047 Petunia axillaris HOM05D000247 ORTHO05D000288 4.2e-08 60.5 39 64.1
RcHm_v2.0_Chr5g0004481 Rosa chinensis HOM05D000247 ORTHO05D000288 4.2e-08 60.5 44 56.8
Sed0000067 Sechium edule HOM05D000247 ORTHO05D000288 4.2e-08 60.5 44 52.3
vmacro15839 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 5.5e-08 60.1 44 59.1
Aqoxy1G03798 Aquilegia oxysepala HOM05D000247 ORTHO05D000288 7.1e-08 59.7 44 47.7
BraA09t41790Z Brassica rapa HOM05D000247 ORTHO05D000288 7.1e-08 59.7 45 53.3
FvH4_3g02911 Fragaria vesca HOM05D000247 ORTHO05D000288 7.1e-08 59.7 44 54.5
MD05G1336400 Malus domestica HOM05D000247 ORTHO05D000288 7.1e-08 59.7 44 56.8
Prupe.4G029100 Prunus persica HOM05D000247 ORTHO05D000288 7.1e-08 59.7 44 59.1
THA.LOC104809517 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 7.1e-08 59.7 45 53.3
Dinv18939 Davidia involucrata HOM05D000247 ORTHO05D000288 9.3e-08 59.3 44 59.1
arahy.Tifrunner.gnm1.ann1.I0I8XZ Arachis hypogaea HOM05D000247 ORTHO05D000288 1.2e-07 58.9 37 75.7
ClCG03G005110 Citrullus lanatus HOM05D000247 ORTHO05D000288 1.2e-07 58.9 44 52.3
HanXRQChr05g0130751 Helianthus annuus HOM05D000247 ORTHO05D000288 1.2e-07 58.9 44 56.8
SGA_v2.0_scaffold9G05024 Striga asiatica HOM05D000247 ORTHO05D000288 1.2e-07 58.9 38 65.8
Atru.chr10.2109 Acer truncatum HOM05D001139 ORTHO05D000936 1.6e-07 58.5 39 64.1
MELO3C002508.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.6e-07 58.5 44 52.3
MELO3C018122.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.6e-07 58.5 42 59.5
ECA236G1853 Erigeron canadensis HOM05D001139 ORTHO05D000936 1.6e-07 58.5 44 56.8
Atru.chr2.3193 Acer truncatum HOM05D000247 ORTHO05D000288 2.7e-07 57.8 47 51.1
Gohir.A01G073900 Gossypium hirsutum HOM05D000247 ORTHO05D000288 2.7e-07 57.8 41 65.9
Gorai.002G081800 Gossypium raimondii HOM05D000247 ORTHO05D000288 2.7e-07 57.8 41 65.9
Lsat_1_v5_gn_7_18261 Lactuca sativa HOM05D000141 ORTHO05D001968 2.7e-07 57.8 44 59.1
Aa31LG1G3230 Aethionema arabicum HOM05D000247 ORTHO05D000288 3.5e-07 57.4 44 52.3
Cpa.g.sc97.79 Carica papaya HOM05D000247 ORTHO05D000288 4.6e-07 57.0 39 66.7
Manes.15G077200 Manihot esculenta HOM05D000247 ORTHO05D000288 4.6e-07 57.0 46 56.5
Oeu013857.1 Olea europaea HOM05D000247 ORTHO05D000288 4.6e-07 57.0 38 68.4
Atru.chr2.3183 Acer truncatum HOM05D000247 ORTHO05D000288 6.0e-07 56.6 47 48.9
Actinidia11833 Actinidia chinensis HOM05D000247 ORTHO05D000288 6.0e-07 56.6 39 59.0
CsaV3_1G011310 Cucumis sativus L. HOM05D000247 ORTHO05D000288 6.0e-07 56.6 44 52.3
Glyma.13G251200 Glycine max HOM05D000247 ORTHO05D000288 6.0e-07 56.6 45 53.3
Ciclev10009896m.g Citrus clementina HOM05D000247 ORTHO05D000288 7.9e-07 56.2 43 60.5
Psat1g211400 Pisum sativum HOM05D000247 ORTHO05D320495 7.9e-07 56.2 47 55.3
ClCG05G014810 Citrullus lanatus HOM05D000247 ORTHO05D000288 1.0e-06 55.8 42 59.5
Manes.03G122050 Manihot esculenta HOM05D000247 ORTHO05D000288 1.0e-06 55.8 43 51.2
Gohir.D01G060400 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.3e-06 55.5 41 63.4
MSTRG.12952 Avicennia marina HOM05D000247 ORTHO05D000288 3.0e-06 54.3 38 63.2
EL10Ac4g07987 Beta vulgaris HOM05D000247 ORTHO05D000288 3.9e-06 53.9 42 50.0
COL.COLO4_09557 Corchorus olitorius HOM05D000247 ORTHO05D000288 3.9e-06 53.9 46 54.3
CDE01G0748 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 6.7e-06 53.1 38 52.6


User provided reference genes

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