Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 2.3e-29 131.3 57 100.0
TPR.G36092 Trifolium pratense HOM05D003472 ORTHO05D004200 2.3e-29 131.3 57 100.0
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 1.5e-28 128.6 57 98.2
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.9e-28 128.3 57 96.5
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 5.6e-28 126.7 57 96.5
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 1.3e-27 125.6 57 94.7
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 2.8e-27 124.4 57 94.7
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 1.1e-26 122.5 57 93.0
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 1.5e-25 118.6 56 89.3
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 3.4e-25 117.5 56 87.5
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.4e-25 117.5 56 87.5
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.4e-25 117.5 56 87.5
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.4e-25 117.5 56 87.5
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.0e-24 115.9 56 87.5
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.0e-24 115.9 56 85.7
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.7e-24 115.2 56 87.5
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.2e-24 114.8 55 85.5
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 2.2e-24 114.8 55 85.5
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 2.2e-24 114.8 55 87.3
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 2.2e-24 114.8 55 85.5
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 2.9e-24 114.4 56 85.7
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.9e-24 114.4 55 83.6
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 2.9e-24 114.4 55 85.5
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 3.8e-24 114.0 56 85.7
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.8e-24 114.0 56 85.7
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 4.9e-24 113.6 56 83.9
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.5e-24 113.2 55 83.6
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.5e-24 113.2 55 83.6
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.5e-24 113.2 55 83.6
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.5e-24 113.2 55 83.6
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 6.5e-24 113.2 56 85.7
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 6.5e-24 113.2 56 83.9
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 8.4e-24 112.8 56 87.5
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 8.4e-24 112.8 55 81.8
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 1.1e-23 112.5 55 81.8
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 1.4e-23 112.1 56 82.1
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 1.9e-23 111.7 55 81.8
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.5e-23 111.3 56 80.4
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 2.5e-23 111.3 56 85.7
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 2.5e-23 111.3 56 85.7
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.5e-23 111.3 56 82.1
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 3.2e-23 110.9 55 81.8
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 3.2e-23 110.9 55 81.8
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 4.2e-23 110.5 55 81.8
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 5.5e-23 110.2 56 83.9
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 80.4
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 82.1
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 82.1
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 82.1
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 7.1e-23 109.8 55 81.8
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 82.1
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.1e-23 109.8 56 83.9
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 9.3e-23 109.4 55 81.8
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 9.3e-23 109.4 54 83.3
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 1.2e-22 109.0 55 80.0
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 1.2e-22 109.0 56 82.1
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.2e-22 109.0 56 82.1
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 1.6e-22 108.6 55 83.6
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 1.6e-22 108.6 56 80.4
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.6e-22 108.6 55 81.8
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.1e-22 108.2 55 80.0
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.1e-22 108.2 55 78.2
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 2.7e-22 107.8 56 82.1
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 4.6e-22 107.1 56 76.8
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.6e-22 107.1 55 80.0
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.6e-22 107.1 55 78.2
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 4.6e-22 107.1 56 78.6
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 4.6e-22 107.1 55 76.4
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 6.0e-22 106.7 56 80.4
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 7.9e-22 106.3 55 78.2
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 7.9e-22 106.3 55 76.4
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 7.9e-22 106.3 55 78.2
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 7.9e-22 106.3 55 80.0
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 1.0e-21 105.9 55 78.2
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 1.0e-21 105.9 55 76.4
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 1.0e-21 105.9 55 78.2
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.0e-21 105.9 55 80.0
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 1.3e-21 105.5 55 80.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.3e-21 105.5 55 76.4
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 1.3e-21 105.5 53 83.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 1.3e-21 105.5 53 83.0
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.8e-21 105.1 55 78.2
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 3.0e-21 104.4 55 74.5
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 3.0e-21 104.4 55 76.4
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 3.0e-21 104.4 56 78.6
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 3.0e-21 104.4 56 76.8
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 3.9e-21 104.0 55 78.2
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 3.9e-21 104.0 55 76.4
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 3.9e-21 104.0 55 76.4
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 5.1e-21 103.6 56 75.0
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 6.7e-21 103.2 55 76.4
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 6.7e-21 103.2 56 78.6
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 8.7e-21 102.8 55 76.4
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.7e-21 102.8 55 78.2
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 1.1e-20 102.4 55 76.4
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 1.1e-20 102.4 55 76.4
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.5e-20 102.1 56 73.2
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.5e-20 102.1 56 76.8
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 1.9e-20 101.7 55 76.4
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.5e-20 101.3 55 74.5
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.5e-20 101.3 55 74.5
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 2.5e-20 101.3 56 76.8
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 2.5e-20 101.3 55 72.7
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 2.5e-20 101.3 55 72.7
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 2.5e-20 101.3 55 72.7
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 3.3e-20 100.9 56 71.4
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 5.7e-20 100.1 53 77.4
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 7.4e-20 99.8 55 72.7
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 9.7e-20 99.4 56 75.0
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 2.2e-19 98.2 55 74.5
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 3.7e-19 97.4 55 76.4
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 4.8e-19 97.1 55 74.5
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 4.8e-19 97.1 55 72.7
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.4e-18 95.5 55 72.7
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.4e-18 95.5 54 74.1
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.8e-18 95.1 55 69.1
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.8e-18 95.1 55 74.5
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.4e-18 94.7 55 70.9
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 5.3e-18 93.6 55 70.9
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 5.3e-18 93.6 54 72.2
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 6.9e-18 93.2 57 68.4
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 9.0e-18 92.8 55 69.1
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 9.0e-18 92.8 55 70.9
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.2e-17 92.4 55 70.9
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 1.2e-17 92.4 55 69.1
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.2e-17 92.4 51 74.5
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 2.0e-17 91.7 55 70.9
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.0e-17 91.7 55 69.1
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 3.4e-17 90.9 55 69.1
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 3.4e-17 90.9 55 69.1
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 3.4e-17 90.9 55 69.1
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 3.4e-17 90.9 55 69.1
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 3.4e-17 90.9 55 69.1
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 3.4e-17 90.9 53 71.7
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 2.9e-16 87.8 50 70.0
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.9e-16 87.8 54 70.4
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 6.5e-16 86.7 55 67.3
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 6.5e-16 86.7 55 67.3
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 6.5e-16 86.7 55 67.3
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 1.4e-15 85.5 51 70.6
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 1.4e-15 85.5 51 70.6
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.9e-15 85.1 55 58.2
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.6e-14 82.0 55 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 2.7e-14 81.3 52 61.5
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 1.4e-13 79.0 55 63.6
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.4e-13 79.0 48 62.5
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.4e-13 79.0 48 62.5
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.8e-13 78.6 55 56.4
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.3e-13 78.2 55 56.4
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.3e-12 74.3 56 55.4
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.7e-11 72.0 56 53.6
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.7e-11 72.0 56 53.6
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 1.1e-10 69.3 46 63.0
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 4.5e-09 63.9 29 89.7
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 4.5e-09 63.9 37 67.6
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 6.5e-08 60.1 26 88.5
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 1.9e-07 58.5 43 58.1
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 9.4e-07 56.2 35 65.7
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 9.4e-07 56.2 45 55.6


User provided reference genes

Program Settings