Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.8e-21 104.4 54 100.0
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.8e-21 104.4 54 100.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 5.4e-20 100.1 54 94.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.6e-19 98.6 54 88.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.0e-19 98.2 54 90.7
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.9e-19 96.7 54 85.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 7.7e-19 96.3 54 87.0
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.0e-18 95.9 54 87.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.0e-18 95.9 52 92.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.3e-18 95.5 54 87.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.3e-18 95.5 54 87.0
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.9e-18 94.4 52 90.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 5.0e-18 93.6 54 83.3
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-17 92.4 54 83.3
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.1e-17 92.4 54 83.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.9e-17 91.7 54 83.3
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.9e-17 91.7 54 83.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.2e-16 89.0 54 81.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-16 88.6 54 81.5
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.4e-15 85.5 53 81.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.8e-15 85.1 53 75.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.0e-15 84.0 46 89.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 6.8e-15 83.2 53 75.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 8.9e-15 82.8 54 74.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-14 82.4 53 77.4
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.5e-14 82.0 53 73.6
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.5e-14 82.0 50 80.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.6e-14 81.3 54 74.1
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.6e-14 81.3 54 74.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.6e-14 81.3 54 74.1
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.6e-14 81.3 52 76.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.6e-14 81.3 53 73.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.4e-14 80.9 52 73.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.4e-14 80.9 54 74.1
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.4e-14 80.9 54 74.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.4e-14 80.9 54 74.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.4e-14 80.9 54 72.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.4e-14 80.9 53 77.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.4e-14 80.9 53 75.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.4e-14 80.5 54 74.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.4e-14 80.5 53 73.6
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 5.7e-14 80.1 54 75.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.7e-14 80.1 53 75.5
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 5.7e-14 80.1 53 75.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.7e-14 80.1 53 69.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.5e-14 79.7 53 73.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 7.5e-14 79.7 53 75.5
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.5e-14 79.7 53 73.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 7.5e-14 79.7 50 74.0
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 9.8e-14 79.3 51 80.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.8e-14 79.3 53 77.4
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 9.8e-14 79.3 53 77.4
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.8e-14 79.3 48 79.2
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.3e-13 79.0 53 71.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.3e-13 79.0 53 71.7
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.3e-13 79.0 53 75.5
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.3e-13 79.0 53 71.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-13 78.6 54 68.5
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 71.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 71.7
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.7e-13 78.6 52 75.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.7e-13 78.6 52 76.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 73.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 71.7
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 69.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.7e-13 78.6 53 73.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 71.7
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 71.7
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 69.8
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 69.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.2e-13 78.2 52 73.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 69.8
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.2e-13 78.2 53 69.8
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 69.8
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 73.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 73.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 75.5
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 75.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.8e-13 77.8 53 67.9
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.7e-13 77.4 53 67.9
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.7e-13 77.4 52 76.9
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.7e-13 77.4 51 72.5
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.9e-13 77.0 52 71.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.9e-13 77.0 53 67.9
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 4.9e-13 77.0 53 69.8
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.3e-13 76.6 54 68.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 8.3e-13 76.3 54 63.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 8.3e-13 76.3 52 69.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 8.3e-13 76.3 52 73.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.1e-12 75.9 53 73.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.1e-12 75.9 53 66.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-12 75.9 53 73.6
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.1e-12 75.9 52 75.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-12 75.5 53 66.0
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.4e-12 75.5 52 71.2
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.8e-12 75.1 53 64.2
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-12 75.1 52 65.4
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-12 75.1 52 65.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.8e-12 75.1 49 77.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.8e-12 75.1 53 66.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.8e-12 75.1 52 71.2
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.2e-12 74.3 50 70.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.2e-12 74.3 50 74.0
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.2e-12 74.3 50 74.0
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 3.2e-12 74.3 51 70.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.4e-12 73.6 48 75.0
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 7.0e-12 73.2 50 68.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 7.0e-12 73.2 50 68.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 7.0e-12 73.2 42 83.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 7.0e-12 73.2 53 66.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 9.2e-12 72.8 53 71.7
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.2e-11 72.4 51 72.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.2e-11 72.4 50 72.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.2e-11 72.4 50 66.0
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.2e-11 72.4 42 81.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.6e-11 72.0 51 66.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.7e-11 71.2 50 64.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.7e-11 71.2 54 55.6
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.7e-11 71.2 50 68.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.5e-11 70.9 50 64.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 3.5e-11 70.9 50 64.0
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 4.5e-11 70.5 50 70.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.5e-11 70.5 51 64.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 7.8e-11 69.7 50 66.0
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.0e-10 69.3 51 60.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-10 68.9 50 60.0
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.3e-10 68.2 50 66.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 5.0e-10 67.0 54 55.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 8.6e-10 66.2 51 64.7
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.9e-09 65.1 37 78.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.5e-09 64.7 49 63.3
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-09 63.9 47 66.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 9.5e-09 62.8 47 63.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.8e-08 61.2 48 58.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.6e-08 60.8 38 71.1
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.7e-08 60.5 51 54.9


User provided reference genes

Program Settings