Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13631 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
TPR.G20856 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
TPR.G25348 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
TPR.G3517 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
TPR.G3543 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
TPR.G36064 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-15 84.7 40 100.0
Medtr3g105230 Medicago truncatula HOM05D000120 ORTHO05D000068 2.1e-13 77.8 40 92.5
Ca_15829_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 1.0e-12 75.5 40 90.0
Glyma.06G056700 Glycine max HOM05D000120 ORTHO05D000068 1.4e-12 75.1 40 87.5
Medtr3g023740 Medicago truncatula HOM05D000120 ORTHO05D000068 1.8e-12 74.7 40 87.5
Glyma.06G056900 Glycine max HOM05D000120 ORTHO05D000068 4.0e-12 73.6 40 85.0
Psat5g034200 Pisum sativum HOM05D000120 ORTHO05D000068 8.9e-12 72.4 40 85.0
Psat5g034320 Pisum sativum HOM05D000120 ORTHO05D000068 8.9e-12 72.4 40 85.0
TWI34G1263 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 1.7e-10 68.2 39 76.9
Lj1g0021873 Lotus japonicus HOM05D000120 ORTHO05D000068 6.4e-10 66.2 40 77.5
Phvul.009G082800 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 1.1e-09 65.5 40 77.5
Haze_18307 Corylus avellana HOM05D000120 ORTHO05D000068 3.2e-09 63.9 39 76.9
CANSAT25G2409 Cannabis sativa HOM05D000120 ORTHO05D000068 7.0e-09 62.8 39 74.4
SalBow4G1014 Salvia bowleyana HOM05D000120 ORTHO05D000068 9.2e-09 62.4 38 73.7
Cfa017863 Carpinus fangiana HOM05D000120 ORTHO05D007928 1.2e-08 62.0 39 74.4
Eucgr.C00736 Eucalyptus grandis HOM05D000120 ORTHO05D000068 1.6e-08 61.6 39 76.9
Ciclev10010487m.g Citrus clementina HOM05D000120 ORTHO05D000068 2.0e-08 61.2 39 71.8
QL02p017225 Quercus lobata HOM05D000120 ORTHO05D000068 2.0e-08 61.2 39 74.4
VMungo1309G1414 Vigna mungo HOM05D000120 ORTHO05D000068 2.0e-08 61.2 40 75.0
arahy.Tifrunner.gnm1.ann1.0RR02G Arachis hypogaea HOM05D000120 ORTHO05D000068 4.6e-08 60.1 40 72.5
arahy.Tifrunner.gnm1.ann1.4XS3SM Arachis hypogaea HOM05D000120 ORTHO05D000068 4.6e-08 60.1 40 72.5
Lalb_Chr23g0267991 Lupinus albus HOM05D000120 ORTHO05D000068 4.6e-08 60.1 40 75.0
Lalb_Chr08g0244761 Lupinus albus HOM05D000120 ORTHO05D000068 5.9e-08 59.7 40 77.5
FvH4_2g30880 Fragaria vesca HOM05D000120 ORTHO05D000068 7.8e-08 59.3 39 71.8
FAN20G1907 Fragaria x ananassa HOM05D000120 ORTHO05D000068 7.8e-08 59.3 39 71.8
FAN24G1804 Fragaria x ananassa HOM05D000120 ORTHO05D000068 7.8e-08 59.3 39 71.8
FAN27G1543 Fragaria x ananassa HOM05D000120 ORTHO05D000068 7.8e-08 59.3 39 71.8
PGR142G0334 Punica granatum HOM05D000120 ORTHO05D000068 1.0e-07 58.9 39 69.2
Sc23g0006110 Simmondsia chinensis HOM05D000120 ORTHO05D000068 1.0e-07 58.9 40 67.5
RcHm_v2.0_Chr6g0311961 Rosa chinensis HOM05D000120 ORTHO05D000068 1.3e-07 58.5 39 69.2
MELO3C011492.2 Cucumis melo HOM05D000120 ORTHO05D000068 1.7e-07 58.2 38 71.1
Manes.03G053900 Manihot esculenta HOM05D000120 ORTHO05D000068 1.7e-07 58.2 39 71.8
Potri.006G219700 Populus trichocarpa HOM05D000120 ORTHO05D000068 2.3e-07 57.8 39 69.2
Sabra06G0169600 Salix brachista HOM05D000120 ORTHO05D000068 2.3e-07 57.8 39 69.2
Prupe.1G403300 Prunus persica HOM05D000120 ORTHO05D000068 3.0e-07 57.4 39 71.8
TAR624G0701 Trochodendron aralioides HOM05D000120 ORTHO05D000068 3.0e-07 57.4 39 71.8
GSVIVG01035481001 Vitis vinifera HOM05D000120 ORTHO05D000068 3.0e-07 57.4 39 71.8
ATR0598G236 Amborella trichopoda HOM05D000120 ORTHO05D000068 3.9e-07 57.0 39 69.2
Atru.chr7.1836 Acer truncatum HOM05D000120 ORTHO05D000068 5.0e-07 56.6 39 64.1
CDE04G0980 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 5.0e-07 56.6 38 68.4
ClCG00G004670 Citrullus lanatus HOM05D000120 ORTHO05D000068 5.0e-07 56.6 39 69.2
ClCG08G009770 Citrullus lanatus HOM05D000120 ORTHO05D000068 5.0e-07 56.6 39 69.2
CsaV3_6G031900 Cucumis sativus L. HOM05D000120 ORTHO05D000068 5.0e-07 56.6 38 68.4
Lj8A454G27 Lonicera japonica HOM05D000120 ORTHO05D000068 6.6e-07 56.2 38 71.1
Gohir.D06G079500 Gossypium hirsutum HOM05D000120 ORTHO05D000068 8.6e-07 55.8 37 67.6
Duzib168G0681 Durio zibethinus HOM05D000120 ORTHO05D000068 1.1e-06 55.5 38 71.1
MD08G1072800 Malus domestica HOM05D000120 ORTHO05D000068 1.1e-06 55.5 39 69.2
Nn8g38646 Nelumbo nucifera HOM05D000120 ORTHO05D000068 1.1e-06 55.5 39 66.7
Gohir.A06G080000 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.5e-06 55.1 37 67.6
MD15G1049000 Malus domestica HOM05D000120 ORTHO05D000068 1.5e-06 55.1 38 71.1
Sopen06g024600 Solanum pennellii HOM05D000120 ORTHO05D000068 1.5e-06 55.1 37 67.6
Gorai.010G092700 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.9e-06 54.7 37 64.9
Lj8C454T5 Lonicera japonica HOM05D000120 ORTHO05D000068 1.9e-06 54.7 38 68.4
Sed0009289 Sechium edule HOM05D000120 ORTHO05D000068 1.9e-06 54.7 39 69.2
unitig_748.g7560 Utricularia gibba HOM05D000120 ORTHO05D000068 2.5e-06 54.3 40 65.0
Cpa.g.sc126.11 Carica papaya HOM05D000120 ORTHO05D000068 3.3e-06 53.9 39 64.1
ECA236G2268 Erigeron canadensis HOM05D000120 ORTHO05D000068 3.3e-06 53.9 38 65.8
PSO135G0749 Papaver somniferum HOM05D000120 ORTHO05D000068 3.3e-06 53.9 39 66.7
PSO724G0475 Papaver somniferum HOM05D000120 ORTHO05D000068 3.3e-06 53.9 39 66.7
Solyc06g066120.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 4.3e-06 53.5 37 64.9
PGSC0003DMG401020473 Solanum tuberosum HOM05D000120 ORTHO05D000068 4.3e-06 53.5 37 64.9
Manes.16G086400 Manihot esculenta HOM05D000120 ORTHO05D000068 5.6e-06 53.1 39 66.7
Os02g0778600 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 5.6e-06 53.1 38 65.8
SGA_v2.0_scaffold64G21893 Striga asiatica HOM05D000120 ORTHO05D000068 5.6e-06 53.1 38 65.8
MSTRG.11632 Avicennia marina HOM05D000120 ORTHO05D000068 7.3e-06 52.8 40 65.0
Carub.0005s0965 Capsella rubella HOM05D000120 ORTHO05D000068 7.3e-06 52.8 39 61.5
CAN.G1230.14 Capsicum annuum HOM05D000120 ORTHO05D000068 7.3e-06 52.8 37 64.9
DCAR_000118 Daucus carota HOM05D000120 ORTHO05D000068 7.3e-06 52.8 39 64.1
DCAR_007768 Daucus carota HOM05D000120 ORTHO05D000068 7.3e-06 52.8 39 64.1
HanXRQChr05g0135891 Helianthus annuus HOM05D000120 ORTHO05D000068 7.3e-06 52.8 38 65.8
Aqoxy7G04084 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 9.5e-06 52.4 38 63.2
BcaB02g10770 Brassica carinata HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
BcaC01g02228 Brassica carinata HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
A06p26800 Brassica napus HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
C03p67640 Brassica napus HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
BolSC21t60258H Brassica oleracea HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
BraA06t25609Z Brassica rapa HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
Thhalv10002503m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
Sp5g17330 Schrenkiella parvula HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5
THA.LOC104815088 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 9.5e-06 52.4 39 61.5


User provided reference genes

Program Settings