Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.2e-96 356.7 200 100.0
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 9.7e-75 283.9 202 80.7
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 6.9e-73 277.7 193 79.3
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 4.5e-72 275.0 194 79.4
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 6.5e-71 271.2 195 77.4
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.4e-70 270.0 195 75.9
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 3.2e-70 268.9 200 77.0
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.6e-69 265.4 200 73.5
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.6e-67 259.2 202 70.8
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 2.4e-65 252.7 202 70.8
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 5.3e-65 251.5 176 76.7
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 7.7e-64 247.7 202 69.3
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.8e-63 245.4 202 67.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 8.5e-63 244.2 200 68.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.9e-62 243.0 175 75.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 7.2e-62 241.1 202 66.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 6.1e-61 238.0 171 75.4
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.8e-60 236.5 198 67.2
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 2.3e-60 236.1 203 66.0
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 5.2e-60 235.0 203 66.0
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 8.8e-60 234.2 176 72.2
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 1.7e-58 229.9 194 65.5
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.2e-58 229.6 200 65.5
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.8e-58 229.2 199 67.3
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 6.3e-58 228.0 164 75.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 6.3e-58 228.0 171 70.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 8.2e-58 227.6 194 67.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.2e-58 227.6 200 64.5
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.1e-57 225.7 200 66.0
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 5.3e-57 224.9 200 64.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 5.3e-57 224.9 201 65.2
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 7.0e-57 224.6 185 68.1
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 7.0e-57 224.6 194 66.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.0e-57 224.6 193 65.8
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 7.0e-57 224.6 193 65.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.2e-56 223.8 201 64.2
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.6e-56 223.4 170 72.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.6e-56 223.4 200 63.5
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.6e-56 223.4 200 63.5
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.7e-56 222.6 201 64.7
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 4.5e-56 221.9 166 72.3
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.5e-56 221.9 166 72.3
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 5.9e-56 221.5 204 61.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.9e-56 221.5 199 63.3
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 7.7e-56 221.1 166 72.3
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.3e-55 220.3 205 64.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 1.7e-55 219.9 201 65.2
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.7e-55 219.9 201 65.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.7e-55 219.9 165 72.1
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 2.2e-55 219.5 146 78.8
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.9e-55 219.2 181 66.9
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 2.9e-55 219.2 141 79.4
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.8e-55 218.8 174 71.3
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 6.5e-55 218.0 204 65.2
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.1e-54 217.2 169 70.4
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.5e-54 216.1 168 70.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.5e-54 216.1 176 68.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.5e-54 216.1 176 68.8
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.5e-54 216.1 199 63.8
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.5e-54 216.1 152 75.7
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 5.5e-54 214.9 175 66.9
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.6e-53 213.4 188 66.5
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-53 213.4 145 78.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.6e-53 213.4 200 61.0
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.6e-53 213.4 199 63.8
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.1e-53 213.0 147 76.9
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-53 213.0 174 68.4
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-53 213.0 172 68.6
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.1e-53 213.0 141 78.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.1e-53 213.0 165 69.7
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.1e-53 213.0 186 64.5
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 2.7e-53 212.6 204 63.7
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.7e-53 212.6 151 74.8
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.7e-53 212.6 182 65.4
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 3.6e-53 212.2 145 77.9
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 4.7e-53 211.8 152 75.7
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 4.7e-53 211.8 145 77.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.7e-53 211.8 201 62.2
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.7e-53 211.8 146 77.4
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 6.1e-53 211.5 176 67.0
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.8e-52 209.9 194 63.4
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 5.2e-52 208.4 146 74.7
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 5.2e-52 208.4 195 62.6
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 5.2e-52 208.4 188 62.8
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 6.8e-52 208.0 141 77.3
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.2e-51 207.2 185 65.4
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.2e-51 207.2 182 64.8
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.5e-51 206.8 200 62.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.5e-51 206.8 146 76.7
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.5e-51 206.8 146 76.7
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.5e-51 206.8 146 76.7
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.5e-51 206.8 146 76.7
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.5e-51 206.8 195 61.5
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.5e-51 206.8 171 67.8
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.5e-51 206.8 187 64.2
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.0e-51 206.5 188 62.2
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.0e-51 206.5 199 61.8
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.0e-51 206.5 196 61.7
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.6e-51 206.1 145 77.2
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 2.6e-51 206.1 188 63.3
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 3.4e-51 205.7 191 62.8
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.4e-51 205.7 169 66.9
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.4e-51 205.3 146 76.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 4.4e-51 205.3 145 73.8
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 4.4e-51 205.3 147 72.8
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.7e-51 204.9 205 61.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 5.7e-51 204.9 196 61.2
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 7.5e-51 204.5 197 61.4
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.3e-50 203.8 170 65.9
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.3e-50 203.8 196 61.2
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.7e-50 203.4 145 75.2
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.2e-50 203.0 140 76.4
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.2e-50 203.0 154 72.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 3.7e-50 202.2 200 61.5
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.7e-50 202.2 154 71.4
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 6.3e-50 201.4 176 64.2
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.8e-49 199.9 115 88.7
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.8e-49 199.9 115 87.8
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.1e-49 199.1 175 65.1
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 7.0e-49 198.0 113 89.4
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 7.0e-49 198.0 113 90.3
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.0e-48 196.4 113 88.5
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.0e-48 196.4 115 85.2
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.0e-48 196.4 115 85.2
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 3.5e-48 195.7 176 64.2
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 3.5e-48 195.7 146 72.6
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 7.7e-48 194.5 189 63.5
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.7e-47 193.4 152 68.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 2.9e-47 192.6 112 87.5
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 6.5e-47 191.4 145 73.1
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 8.6e-47 191.0 184 63.0
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.5e-46 190.3 147 69.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.4e-43 178.7 199 56.3
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.7e-43 178.3 182 57.1
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.8e-43 177.6 199 55.8
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.3e-42 177.2 112 82.1
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.8e-42 176.0 178 62.4
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 4.9e-42 175.3 118 72.0
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 6.3e-42 174.9 169 61.5
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.8e-41 173.3 108 78.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.2e-40 170.6 106 84.0
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 2.0e-40 169.9 175 57.1
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.7e-40 169.5 146 63.0
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.0e-39 165.2 146 61.6
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.5e-38 163.7 144 63.9
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.5e-38 163.7 183 57.9
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.1e-37 159.8 196 53.1
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.8e-37 159.5 154 54.5
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 4.0e-36 155.6 113 69.9
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 5.2e-36 155.2 111 69.4
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.2e-35 154.1 154 59.1
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.7e-34 150.2 138 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 5.4e-33 145.2 135 60.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 5.4e-33 145.2 298 36.2
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 6.2e-29 131.7 109 60.6
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 8.0e-29 131.3 164 52.4
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.6e-24 117.1 104 57.7
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 2.7e-24 116.3 84 75.0
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.0e-24 115.2 125 56.0
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.0e-23 114.4 91 70.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 5.0e-23 112.1 94 66.0
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.5e-22 110.5 94 64.9
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-22 110.2 87 72.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.9e-22 110.2 85 72.9
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-21 107.5 87 71.3
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-21 107.5 87 71.3
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.4e-17 94.0 120 48.3
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 8.6e-15 84.7 63 68.3
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.6e-13 80.5 49 79.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 8.1e-13 78.2 44 88.6
Psat5g263840 Pisum sativum HOM05D001198 ORTHO05D001599 1.8e-12 77.0 102 48.0
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 9.2e-09 64.7 87 47.1
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 2.1e-08 63.5 38 81.6


User provided reference genes

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