Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 9.2e-83 310.1 146 100.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.7e-71 271.2 143 87.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.1e-70 268.5 147 85.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 5.2e-70 267.7 148 86.5
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.2e-69 266.5 147 84.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.0e-69 265.8 143 83.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.0e-69 265.8 147 84.4
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.0e-69 265.8 148 85.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.6e-69 265.4 146 84.2
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 84.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 82.2
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 83.6
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.8e-68 261.5 147 83.7
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 8.4e-68 260.4 143 81.8
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 81.5
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 83.6
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.4e-67 259.6 143 81.8
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 80.1
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 80.8
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 80.3
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 80.3
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 81.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.8e-66 253.8 148 80.4
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-65 253.4 148 82.4
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 81.5
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 80.1
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 80.1
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 78.8
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.9
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 80.8
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-64 249.2 147 81.0
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 4.3e-64 248.1 140 82.1
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 78.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 78.8
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 76.7
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 77.4
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 147 79.6
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 147 79.6
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.6e-63 246.1 147 76.9
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 77.4
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 77.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 78.8
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 77.4
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 77.4
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 6.2e-63 244.2 148 75.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 78.1
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 77.4
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.1e-62 243.4 150 78.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 77.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.4e-62 243.0 148 76.4
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 75.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 77.4
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 74.7
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 75.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 75.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 79.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.0e-62 241.5 147 74.8
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 74.8
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 74.7
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 76.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 73.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.0e-61 239.2 132 83.3
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.0e-61 239.2 132 83.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 73.3
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 74.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 76.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 78.4
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 73.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 76.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 74.7
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.2e-60 235.7 137 78.8
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 71.9
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 74.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.9e-60 234.6 132 81.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 6.4e-60 234.2 143 74.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 6.4e-60 234.2 146 71.2
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.1e-59 233.4 147 72.8
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.1e-59 233.4 150 74.7
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 74.0
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 74.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 71.9
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.2e-59 231.9 140 76.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 71.2
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 7.1e-59 230.7 146 70.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 7.1e-59 230.7 145 71.7
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 9.3e-59 230.3 149 73.2
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 72.1
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-58 229.9 130 81.5
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-58 229.9 146 72.6
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 73.6
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 71.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 6.0e-58 227.6 146 69.2
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.9e-58 227.3 146 69.2
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-57 226.1 146 74.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.0e-57 225.3 149 71.1
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 3.9e-57 224.9 146 70.5
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 6.7e-57 224.2 146 69.9
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 8.7e-57 223.8 149 70.5
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 150 72.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-56 223.4 150 72.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-56 223.4 150 72.0
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.5e-56 222.2 147 72.1
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.3e-56 221.9 146 69.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.3e-56 221.9 147 72.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 3.3e-56 221.9 151 70.2
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 4.3e-56 221.5 150 72.0
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 5.6e-56 221.1 125 80.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.6e-55 219.5 147 69.4
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.1e-55 219.2 150 71.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 147 70.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.8e-55 218.0 147 70.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 70.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 70.7
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.1e-54 216.9 146 67.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 69.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 69.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 68.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.3e-54 214.5 132 78.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.0e-53 212.6 144 68.1
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.6e-53 212.2 150 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.6e-53 212.2 150 68.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.3e-52 209.9 146 67.1
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.9e-52 208.8 139 69.8
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.9e-52 208.0 131 70.2
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 7.1e-51 204.1 148 68.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 7.1e-51 204.1 148 68.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 7.1e-51 204.1 148 68.2
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.1e-51 204.1 114 80.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 7.1e-51 204.1 151 64.2
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 9.3e-51 203.8 146 61.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.1e-50 202.6 134 71.6
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.5e-50 201.8 123 76.4
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 3.5e-50 201.8 146 60.3
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 6.0e-50 201.1 138 70.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.3e-49 199.9 146 65.8
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.9e-48 196.1 146 63.7
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.2e-44 182.6 146 67.1
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.8e-44 181.8 146 64.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-39 166.8 101 73.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.6e-39 166.4 101 75.2
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 2.4e-38 162.5 146 56.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-36 155.6 97 76.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 5.0e-36 154.8 148 54.1
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 3.2e-35 152.1 138 55.8
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.6e-29 132.5 141 48.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.7e-23 113.2 66 78.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.1e-22 108.6 127 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 5.3e-22 108.2 90 55.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.6e-21 105.9 75 68.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 7.7e-13 77.8 98 35.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.2e-08 63.9 37 75.7
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 5.7e-08 61.6 74 40.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.8e-06 56.6 76 42.1


User provided reference genes

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