Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35908 Trifolium pratense HOM05D003319 ORTHO05D003739 2.9e-85 318.5 162 100.0
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 5.1e-34 148.3 162 51.9
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 1.5e-33 146.7 162 52.5
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 4.4e-33 145.2 162 53.1
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 3.1e-31 139.0 162 51.9
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 4.1e-31 138.7 162 50.0
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 3.8e-29 132.1 162 47.5
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 5.0e-29 131.7 162 48.8
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 8.5e-29 131.0 162 51.2
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 2.5e-28 129.4 162 46.9
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 2.5e-28 129.4 162 46.3
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 7.2e-28 127.9 162 48.1
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 7.2e-28 127.9 167 45.5
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 1.6e-27 126.7 164 50.6
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 1.4e-26 123.6 162 48.8
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 4.0e-26 122.1 162 46.9
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 4.0e-26 122.1 162 46.9
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 2.0e-25 119.8 162 42.6
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 5.7e-25 118.2 162 45.1
Glyma.06G097100 Glycine max HOM05D003319 ORTHO05D003739 2.8e-24 115.9 135 51.9
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 1.4e-23 113.6 162 43.2
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 1.6e-22 110.2 163 45.4
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 5.9e-22 108.2 163 43.6
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 2.2e-21 106.3 163 42.9
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 3.8e-21 105.5 166 45.2
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 3.8e-21 105.5 163 44.2
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 5.0e-21 105.1 160 41.2
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 8.5e-21 104.4 160 39.4
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 8.5e-21 104.4 162 42.6
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 8.5e-21 104.4 163 41.7
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 8.5e-21 104.4 169 41.4
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 8.5e-21 104.4 163 43.6
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 1.9e-20 103.2 165 43.6
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 2.5e-20 102.8 163 42.9
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 2.5e-20 102.8 164 40.9
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 3.2e-20 102.4 164 45.1
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 4.2e-20 102.1 162 42.0
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 5.5e-20 101.7 163 42.9
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 5.5e-20 101.7 166 42.8
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 7.2e-20 101.3 163 42.3
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 7.2e-20 101.3 162 42.0
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 9.4e-20 100.9 163 41.1
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 1.2e-19 100.5 163 40.5
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 1.6e-19 100.1 163 41.7
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 1.6e-19 100.1 163 41.1
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.1e-19 99.8 168 43.5
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 2.1e-19 99.8 163 44.2
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 2.7e-19 99.4 163 43.6
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 4.7e-19 98.6 165 40.0
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 4.7e-19 98.6 163 40.5
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 6.1e-19 98.2 169 41.4
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 8.0e-19 97.8 163 40.5
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 8.0e-19 97.8 172 44.2
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 1.0e-18 97.4 163 41.1
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.4e-18 97.1 171 42.1
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 1.4e-18 97.1 168 42.3
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 1.4e-18 97.1 164 42.1
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 1.4e-18 97.1 163 38.0
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 1.8e-18 96.7 164 40.2
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 2.3e-18 96.3 170 42.4
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 2.3e-18 96.3 166 44.6
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 3.0e-18 95.9 167 43.1
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 4.0e-18 95.5 166 41.0
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 6.8e-18 94.7 163 41.7
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 8.8e-18 94.4 163 41.1
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 8.8e-18 94.4 163 41.1
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 8.8e-18 94.4 165 41.2
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 1.2e-17 94.0 163 42.3
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 1.2e-17 94.0 163 43.6
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 1.2e-17 94.0 163 39.3
Prupe.1G532600 Prunus persica HOM05D003319 ORTHO05D003739 1.2e-17 94.0 170 38.8
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 1.5e-17 93.6 164 40.9
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 1.5e-17 93.6 169 42.6
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 2.6e-17 92.8 163 42.3
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 4.4e-17 92.0 163 40.5
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 5.7e-17 91.7 163 42.9
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 5.7e-17 91.7 163 36.8
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 5.7e-17 91.7 163 41.1
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 5.7e-17 91.7 169 40.2
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 9.8e-17 90.9 163 39.9
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 9.8e-17 90.9 163 39.3
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.3e-16 90.5 164 40.9
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 1.3e-16 90.5 167 38.3
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 2.2e-16 89.7 163 41.1
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.2e-16 89.7 168 38.1
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 2.2e-16 89.7 163 38.7
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 3.7e-16 89.0 163 37.4
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 3.7e-16 89.0 163 38.7
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 3.7e-16 89.0 166 38.6
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 4.8e-16 88.6 163 39.3
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 4.8e-16 88.6 163 39.9
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 8.3e-16 87.8 163 38.7
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 1.4e-15 87.0 163 38.0
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 1.4e-15 87.0 165 38.2
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 1.4e-15 87.0 168 35.1
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 1.4e-15 87.0 169 39.1
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 1.4e-15 87.0 163 38.0
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 1.8e-15 86.7 164 37.8
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 1.8e-15 86.7 166 37.3
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 2.4e-15 86.3 163 37.4
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 2.4e-15 86.3 166 38.0
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 3.1e-15 85.9 163 40.5
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.1e-15 85.9 166 38.0
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 9.1e-15 84.3 163 37.4
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.2e-14 84.0 163 40.5
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 1.6e-14 83.6 166 37.3
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 2.0e-14 83.2 163 35.6
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 2.0e-14 83.2 166 36.7
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 2.7e-14 82.8 164 37.8
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 2.7e-14 82.8 164 37.8
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 2.7e-14 82.8 163 40.5
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 2.7e-14 82.8 166 38.6
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 3.5e-14 82.4 166 36.7
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.5e-14 82.4 163 35.0
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 3.5e-14 82.4 166 36.7
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 4.5e-14 82.0 163 37.4
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 4.5e-14 82.0 166 38.6
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 7.7e-14 81.3 167 38.3
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 2.2e-13 79.7 153 35.9
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 2.9e-13 79.3 163 31.9
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 3.8e-13 79.0 163 36.2
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 3.8e-13 79.0 161 35.4
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 3.8e-13 79.0 165 35.8
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 8.5e-13 77.8 142 44.4
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 1.5e-12 77.0 165 34.5
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 1.5e-12 77.0 167 38.9
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 1.9e-12 76.6 163 37.4
Lj4A88T36 Lonicera japonica HOM05D003319 ORTHO05D003739 3.2e-12 75.9 161 36.0
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 7.2e-12 74.7 165 37.6
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 7.2e-12 74.7 163 36.8
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 1.2e-11 73.9 163 37.4
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 1.6e-11 73.6 172 35.5
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 1.6e-11 73.6 163 36.2
SEGI_24455 Sequoiadendron giganteum HOM05D003319 ORTHO05D003739 2.7e-11 72.8 136 39.7
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 3.6e-11 72.4 165 36.4
Sed0014936 Sechium edule HOM05D003319 ORTHO05D003739 3.6e-11 72.4 144 40.3
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 4.7e-11 72.0 136 40.4
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 4.7e-11 72.0 162 34.0
AL2G18190 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 1.0e-10 70.9 165 32.7
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 1.4e-10 70.5 174 33.9
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 1.8e-10 70.1 163 33.7
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 1.8e-10 70.1 164 36.6
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 2.3e-10 69.7 163 33.7
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 3.0e-10 69.3 163 36.2
arahy.Tifrunner.gnm1.ann1.1WVB8B Arachis hypogaea HOM05D003319 ORTHO05D003739 3.0e-10 69.3 131 33.6
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 4.0e-10 68.9 168 32.7
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 6.8e-10 68.2 165 32.1
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 6.8e-10 68.2 165 32.1
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 6.8e-10 68.2 165 32.1
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 6.8e-10 68.2 165 32.1
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 6.8e-10 68.2 165 32.1
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 1.2e-09 67.4 166 32.5
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 2.0e-09 66.6 169 32.0
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 2.0e-09 66.6 169 32.0
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 2.6e-09 66.2 166 32.5
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 2.6e-09 66.2 166 32.5
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 2.6e-09 66.2 166 32.5
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 4.4e-09 65.5 183 33.3
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 9.8e-09 64.3 155 34.8
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 1.7e-08 63.5 163 31.9
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 2.2e-08 63.2 177 32.2
SHI20380 Sapria himalayana HOM05D003319 ORTHO05D003739 2.2e-08 63.2 133 33.8
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 3.7e-08 62.4 163 28.8
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 6.3e-08 61.6 188 29.8
Hund17284 Selenicereus undatus HOM05D003319 ORTHO05D003739 1.1e-07 60.8 125 34.4
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 4.1e-07 58.9 124 34.7
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 7.0e-07 58.2 162 29.0
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 1.6e-06 57.0 71 46.5
LjContig00408g0021434 Lotus japonicus HOM05D003319 ORTHO05D003739 2.0e-06 56.6 90 40.0
CBR_g9135 Chara braunii HOM05D003319 ORTHO05D003739 2.7e-06 56.2 47 61.7


User provided reference genes

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