Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35896 Trifolium pratense HOM05D001083 ORTHO05D018699 3.5e-150 535.0 287 100.0
Psat2g002000 Pisum sativum HOM05D001083 ORTHO05D001637 1.2e-78 297.4 303 60.4
Medtr5g098710 Medicago truncatula HOM05D001083 ORTHO05D001637 4.8e-75 285.4 297 63.0
Ca_06486_v3 Cicer arietinum L. HOM05D001083 ORTHO05D001637 4.0e-74 282.3 294 59.9
VMungo0647G2095 Vigna mungo HOM05D001083 ORTHO05D001637 2.0e-44 183.7 305 43.9
Glyma.14G003600 Glycine max HOM05D001083 ORTHO05D001637 1.4e-37 161.0 298 41.3
Lalb_Chr17g0349321 Lupinus albus HOM05D001083 ORTHO05D001637 3.7e-35 152.9 290 41.0
arahy.Tifrunner.gnm1.ann1.17KMWE Arachis hypogaea HOM05D001083 ORTHO05D001637 1.3e-32 144.4 292 40.1
Glyma.02G309200 Glycine max HOM05D001083 ORTHO05D001637 1.5e-31 141.0 284 39.8
arahy.Tifrunner.gnm1.ann1.A0ACWS Arachis hypogaea HOM05D001083 ORTHO05D001637 1.2e-30 137.9 293 39.6
Phvul.008G289400 Phaseolus vulgaris HOM05D001083 ORTHO05D001637 5.2e-29 132.5 168 49.4
LjContig00081g0020061 Lotus japonicus HOM05D001083 ORTHO05D001637 7.5e-28 128.6 305 40.0
CANSAT64G2565 Cannabis sativa HOM05D001083 ORTHO05D001637 4.0e-21 106.3 302 32.5
Prupe.3G192200 Prunus persica HOM05D001083 ORTHO05D001637 2.0e-20 104.0 296 33.4
Cfa014188 Carpinus fangiana HOM05D001083 ORTHO05D001637 3.7e-19 99.8 249 35.3
QL04p065705 Quercus lobata HOM05D001083 ORTHO05D001637 1.4e-18 97.8 296 33.1
VMungo0251G0560 Vigna mungo HOM05D001083 ORTHO05D038907 4.5e-17 92.8 277 33.2
MD17G1123400 Malus domestica HOM05D001083 ORTHO05D001637 7.8e-17 92.0 308 32.8
CSS0020165 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 1.0e-16 91.7 323 32.8
CSS0030266 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 1.0e-16 91.7 323 32.8
Haze_12565 Corylus avellana HOM05D001083 ORTHO05D001637 1.0e-16 91.7 242 33.9
Dinv21335 Davidia involucrata HOM05D001083 ORTHO05D001637 2.3e-16 90.5 310 32.3
Rhsim06G0181800 Rhododendron simsii HOM05D001083 ORTHO05D001637 9.5e-15 85.1 249 39.8
Rhsim06G0182800 Rhododendron simsii HOM05D001083 ORTHO05D001637 9.5e-15 85.1 249 39.8
FAN05G4687 Fragaria x ananassa HOM05D001083 ORTHO05D001637 8.0e-14 82.0 258 30.2
vmacro12034 Vaccinium macrocarpon HOM05D001083 ORTHO05D001637 2.3e-13 80.5 319 32.9
PGR044G2732 Punica granatum HOM05D001083 ORTHO05D001637 4.0e-13 79.7 268 32.1
CiPaw.03G284800 Carya illinoinensis HOM05D001083 ORTHO05D001637 5.2e-13 79.3 256 34.4
Sabra14G0131500 Salix brachista HOM05D001083 ORTHO05D001637 5.2e-13 79.3 301 28.9
CAN.G585.7 Capsicum annuum HOM05D001083 ORTHO05D001637 1.5e-12 77.8 245 32.7
FvH4_6g40180 Fragaria vesca HOM05D001083 ORTHO05D001637 2.0e-12 77.4 258 29.1
Oeu030576.1 Olea europaea HOM05D001083 ORTHO05D001637 2.0e-12 77.4 296 28.7
Duzib138G0365 Durio zibethinus HOM05D001083 ORTHO05D001637 2.6e-12 77.0 282 29.8
Potri.014G172000 Populus trichocarpa HOM05D001083 ORTHO05D001637 3.4e-12 76.6 279 30.5
Migut.M00628 Erythranthe guttata HOM05D001083 ORTHO05D001637 4.4e-12 76.3 289 29.4
Actinidia12340 Actinidia chinensis HOM05D001083 ORTHO05D001637 5.8e-12 75.9 252 33.7
Actinidia20613 Actinidia chinensis HOM05D001083 ORTHO05D001637 5.8e-12 75.9 308 33.1
FAN02G2977 Fragaria x ananassa HOM05D001083 ORTHO05D001637 7.5e-12 75.5 257 28.8
Aqoxy4G02282 Aquilegia oxysepala HOM05D001083 ORTHO05D001637 9.8e-12 75.1 239 32.2
Gorai.001G225300 Gossypium raimondii HOM05D001083 ORTHO05D001637 2.2e-11 73.9 266 29.3
Sopen07g029420 Solanum pennellii HOM05D001083 ORTHO05D001637 2.2e-11 73.9 282 35.1
Cc05_g09900 Coffea canephora HOM05D001083 ORTHO05D001637 2.9e-11 73.6 280 30.4
Sed0020587 Sechium edule HOM05D001083 ORTHO05D001637 3.7e-11 73.2 247 36.0
Manes.12G058400 Manihot esculenta HOM05D001083 ORTHO05D001637 4.9e-11 72.8 270 32.6
Solyc07g056060.4 Solanum lycopersicum HOM05D001083 ORTHO05D001637 4.9e-11 72.8 282 35.1
Gohir.D07G200700 Gossypium hirsutum HOM05D001083 ORTHO05D001637 8.3e-11 72.0 266 28.9
SalBow8G2763 Salvia bowleyana HOM05D001083 ORTHO05D001637 1.1e-10 71.6 309 31.1
Sed0014702 Sechium edule HOM05D001083 ORTHO05D001637 1.9e-10 70.9 216 35.6
Lj8A139G63 Lonicera japonica HOM05D001083 ORTHO05D001637 4.1e-10 69.7 250 30.0
Gohir.A07G194400 Gossypium hirsutum HOM05D001083 ORTHO05D001637 9.2e-10 68.6 262 30.5
FAN14G2444 Fragaria x ananassa HOM05D001083 ORTHO05D001637 1.2e-09 68.2 271 27.7
SGA_v2.0_scaffold70G23598 Striga asiatica HOM05D001083 ORTHO05D001637 1.2e-09 68.2 255 29.8
ClCG02G010600 Citrullus lanatus HOM05D001083 ORTHO05D001637 2.0e-09 67.4 251 34.3
Ciclev10014121m.g Citrus clementina HOM05D001083 ORTHO05D001637 2.0e-09 67.4 253 31.2
Thecc.01G202300 Theobroma cacao HOM05D001083 ORTHO05D001637 2.7e-09 67.0 260 29.2
Cpa.g.sc4189.1 Carica papaya HOM05D001083 ORTHO05D018699 3.5e-09 66.6 265 30.9
PSO541G3473 Papaver somniferum HOM05D001083 ORTHO05D001637 3.5e-09 66.6 320 28.8
MSTRG.15023 Avicennia marina HOM05D001083 ORTHO05D001637 4.6e-09 66.2 253 31.2
TAR629G2855 Trochodendron aralioides HOM05D001083 ORTHO05D001637 4.6e-09 66.2 294 30.6
MD09G1134500 Malus domestica HOM05D001083 ORTHO05D001637 6.0e-09 65.9 285 28.1
Nitab4.5_0004166g0040 Nicotiana tabacum HOM05D001083 ORTHO05D001637 7.8e-09 65.5 255 32.2
CsaV3_6G009810 Cucumis sativus L. HOM05D001083 ORTHO05D001637 1.0e-08 65.1 246 32.1
RcHm_v2.0_Chr2g0155201 Rosa chinensis HOM05D001083 ORTHO05D001637 1.3e-08 64.7 315 29.2
PGSC0003DMG400031098 Solanum tuberosum HOM05D001083 ORTHO05D001637 1.3e-08 64.7 238 34.9
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 2.3e-08 63.9 179 31.8
PSO675G8881 Papaver somniferum HOM05D001083 ORTHO05D001637 2.3e-08 63.9 262 30.9
Cpa.g.sc3051.1 Carica papaya HOM05D001083 ORTHO05D018699 3.9e-08 63.2 302 28.8
ECA234G4394 Erigeron canadensis HOM05D001083 ORTHO05D001637 3.9e-08 63.2 243 33.3
MBI15_g43332_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D001637 1.9e-07 60.8 278 28.8
Sc15g0007380 Simmondsia chinensis HOM05D001083 ORTHO05D001637 5.6e-07 59.3 248 31.5
MELO3C013466.2 Cucumis melo HOM05D001083 ORTHO05D001637 3.6e-06 56.6 247 32.8
Nn1g07658 Nelumbo nucifera HOM05D001083 ORTHO05D001637 3.6e-06 56.6 245 26.9


User provided reference genes

Program Settings