Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 0.0e+00 1246.1 604 100.0
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.5e-235 818.9 428 93.0
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 1.4e-81 308.1 216 71.3
TPR.G810 Trifolium pratense HOM05D023930 ORTHO05D018030 2.4e-36 157.9 88 86.4
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 5.6e-33 146.7 715 23.9
TPR.G18137 Trifolium pratense HOM05D023930 ORTHO05D018030 5.8e-22 110.2 69 69.6
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 4.9e-21 107.1 98 58.2
Medtr5g052190 Medicago truncatula HOM05D023930 ORTHO05D018030 1.9e-20 105.1 99 58.6
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 1.2e-19 102.4 225 34.7
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 2.7e-19 101.3 191 35.6
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.3e-18 98.2 166 39.8
TPR.G22781 Trifolium pratense HOM05D000001 ORTHO05D009773 2.5e-17 94.7 144 39.6
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.3e-17 94.4 139 43.9
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 7.3e-17 93.2 166 38.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 6.2e-16 90.1 129 45.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-15 88.6 166 38.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 3.1e-15 87.8 166 38.6
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 6.9e-15 86.7 131 42.7
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 6.9e-15 86.7 131 42.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 1.2e-14 85.9 166 36.7
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.2e-14 85.9 129 43.4
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 2.0e-14 85.1 132 43.2
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 4.4e-14 84.0 136 42.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 5.8e-14 83.6 130 43.1
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 5.8e-14 83.6 140 40.7
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 1.3e-13 82.4 129 43.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.7e-13 82.0 131 43.5
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.7e-13 82.0 129 42.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.7e-13 82.0 129 42.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.7e-13 82.0 129 42.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 3.8e-13 80.9 131 42.7
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 3.8e-13 80.9 129 42.6
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 4.9e-13 80.5 204 33.3
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 4.9e-13 80.5 151 34.4
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 4.9e-13 80.5 151 34.4
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 6.4e-13 80.1 131 41.2
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.4e-12 79.0 129 41.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.9e-12 78.6 131 41.2
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.9e-12 78.6 125 43.2
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.9e-12 78.6 138 40.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.4e-12 78.2 130 42.3
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 2.4e-12 78.2 130 40.8
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 4.2e-12 77.4 131 42.0
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 4.2e-12 77.4 131 41.2
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 4.2e-12 77.4 130 41.5
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 5.4e-12 77.0 130 41.5
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 5.4e-12 77.0 130 40.8
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.4e-12 77.0 130 40.8
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 7.1e-12 76.6 131 42.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.2e-11 75.9 143 39.9
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.2e-11 75.9 131 40.5
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.2e-11 75.9 166 36.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 1.6e-11 75.5 130 40.8
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.1e-11 75.1 169 37.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.1e-11 75.1 131 40.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 3.5e-11 74.3 141 39.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 3.5e-11 74.3 141 36.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 3.5e-11 74.3 130 40.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 3.5e-11 74.3 131 40.5
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 4.6e-11 73.9 131 39.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 7.8e-11 73.2 145 37.9
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 7.8e-11 73.2 133 42.1
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.0e-10 72.8 145 37.9
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.0e-10 72.8 166 36.1
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.3e-10 72.4 137 39.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.3e-10 72.4 133 42.1
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.3e-10 72.4 132 39.4
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 1.7e-10 72.0 125 40.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.3e-10 71.6 130 39.2
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.0e-10 71.2 131 40.5
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.0e-10 71.2 131 38.9
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 3.0e-10 71.2 131 40.5
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 5.1e-10 70.5 130 40.0
Glyma.10G094300 Glycine max HOM05D000001 ORTHO05D009773 5.1e-10 70.5 176 31.8
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 5.1e-10 70.5 130 40.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 5.1e-10 70.5 129 38.0
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 6.6e-10 70.1 120 42.5
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 8.7e-10 69.7 132 39.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.5e-09 68.9 130 40.0
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 1.9e-09 68.6 130 38.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 1.9e-09 68.6 130 39.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 1.9e-09 68.6 130 39.2
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.9e-09 68.6 130 39.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 1.9e-09 68.6 130 39.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 3.3e-09 67.8 130 39.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.3e-09 67.4 130 40.0
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.3e-09 66.6 132 39.4
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 7.3e-09 66.6 130 36.2
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 7.3e-09 66.6 94 43.6
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 9.6e-09 66.2 140 37.1
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 9.6e-09 66.2 140 37.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 9.6e-09 66.2 130 39.2
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.3e-08 65.9 178 33.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.3e-08 65.9 130 40.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.3e-08 65.9 131 37.4
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.8e-08 64.7 130 39.2
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.8e-08 64.7 129 40.3
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.6e-08 64.3 130 37.7
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 4.8e-08 63.9 132 38.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 4.8e-08 63.9 143 32.9
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 6.2e-08 63.5 132 39.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 8.1e-08 63.2 132 37.9
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.4e-07 62.4 129 37.2
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 4.0e-07 60.8 131 37.4
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 6.9e-07 60.1 120 40.8
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 6.9e-07 60.1 127 37.8
Duzib147G1206 Durio zibethinus HOM05D000001 ORTHO05D009773 1.2e-06 59.3 142 28.9
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 2.6e-06 58.2 73 47.9
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 2.6e-06 58.2 170 33.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 7.6e-06 56.6 130 35.4


User provided reference genes

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