Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35704 Trifolium pratense HOM05D002537 ORTHO05D002751 6.1e-43 177.2 96 100.0
Ca_07076_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 2.0e-38 162.2 94 92.6
Medtr7g020870 Medicago truncatula HOM05D002537 ORTHO05D002751 1.5e-36 156.0 98 89.8
Psat3g190160 Pisum sativum HOM05D002537 ORTHO05D002751 1.5e-36 156.0 96 90.6
Lj1g0023956 Lotus japonicus HOM05D002537 ORTHO05D002751 1.8e-34 149.1 96 86.5
Glyma.18G281800 Glycine max HOM05D002537 ORTHO05D002751 8.3e-32 140.2 96 83.3
Glyma.10G298700 Glycine max HOM05D002537 ORTHO05D002751 7.0e-31 137.1 94 83.0
Glyma.08G257500 Glycine max HOM05D002537 ORTHO05D002751 9.2e-31 136.7 96 82.3
arahy.Tifrunner.gnm1.ann1.QC7JPT Arachis hypogaea HOM05D002537 ORTHO05D002751 2.7e-30 135.2 94 83.0
arahy.Tifrunner.gnm1.ann1.VMJF59 Arachis hypogaea HOM05D002537 ORTHO05D002751 2.7e-30 135.2 94 83.0
VMungo1383G0533 Vigna mungo HOM05D002537 ORTHO05D002751 1.0e-29 133.3 96 79.2
Glyma.20G249900 Glycine max HOM05D002537 ORTHO05D002751 3.0e-29 131.7 94 79.8
Lalb_Chr10g0092211 Lupinus albus HOM05D002537 ORTHO05D002751 6.6e-29 130.6 94 79.8
Phvul.008G019400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 1.5e-28 129.4 96 77.1
Lalb_Chr02g0144711 Lupinus albus HOM05D002537 ORTHO05D002751 5.6e-28 127.5 94 77.7
VMungo0720G0377 Vigna mungo HOM05D002537 ORTHO05D002751 2.1e-27 125.6 94 76.6
QL03p049540 Quercus lobata HOM05D002537 ORTHO05D002751 3.6e-27 124.8 95 70.5
Potri.001G066900 Populus trichocarpa HOM05D002537 ORTHO05D002751 6.2e-27 124.0 94 71.3
Cpa.g.sc2461.1 Carica papaya HOM05D002537 ORTHO05D002751 8.0e-27 123.6 94 72.3
CiPaw.05G101900 Carya illinoinensis HOM05D002537 ORTHO05D002751 1.4e-26 122.9 96 68.8
Dinv19305 Davidia involucrata HOM05D002537 ORTHO05D002751 3.1e-26 121.7 94 71.3
GSVIVG01001081001 Vitis vinifera HOM05D002537 ORTHO05D002751 5.2e-26 120.9 94 70.2
Sabra01G0046500 Salix brachista HOM05D002537 ORTHO05D002751 8.9e-26 120.2 96 68.8
Phvul.007G000400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 1.5e-25 119.4 94 73.4
Manes.09G187700 Manihot esculenta HOM05D002537 ORTHO05D002751 2.6e-25 118.6 96 66.7
Ciclev10005329m.g Citrus clementina HOM05D002537 ORTHO05D002751 5.8e-25 117.5 96 70.8
COL.COLO4_21770 Corchorus olitorius HOM05D002537 ORTHO05D002751 5.8e-25 117.5 96 68.8
Duzib052G0845 Durio zibethinus HOM05D002537 ORTHO05D002751 7.5e-25 117.1 96 69.8
Duzib132G0792 Durio zibethinus HOM05D002537 ORTHO05D002751 7.5e-25 117.1 96 68.8
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 9.8e-25 116.7 94 70.2
vmacro01022 Vaccinium macrocarpon HOM05D002537 ORTHO05D002751 9.8e-25 116.7 95 67.4
Hma1.2p1_0787F.1_g217860 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 1.3e-24 116.3 94 67.0
Dinv01472 Davidia involucrata HOM05D002537 ORTHO05D002751 2.2e-24 115.5 94 67.0
Rhsim12G0017600 Rhododendron simsii HOM05D002537 ORTHO05D002751 2.2e-24 115.5 95 67.4
LjContig00470g0023601 Lotus japonicus HOM05D002537 ORTHO05D002751 2.9e-24 115.2 93 72.0
CSS0022489 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 6.4e-24 114.0 88 70.5
CSS0047452 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 6.4e-24 114.0 88 70.5
CiPaw.06G109100 Carya illinoinensis HOM05D002537 ORTHO05D002751 6.4e-24 114.0 96 64.6
Potri.003G163000 Populus trichocarpa HOM05D002537 ORTHO05D002751 1.1e-23 113.2 94 66.0
TWI36G0118 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.1e-23 113.2 94 69.1
Manes.08G101700 Manihot esculenta HOM05D002537 ORTHO05D002751 1.9e-23 112.5 96 66.7
Atru.chr12.1406 Acer truncatum HOM05D002537 ORTHO05D002751 2.4e-23 112.1 94 63.8
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 3.2e-23 111.7 92 68.5
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 3.2e-23 111.7 92 68.5
Gohir.D01G019300 Gossypium hirsutum HOM05D002537 ORTHO05D002751 5.4e-23 110.9 97 68.0
Hund25508 Selenicereus undatus HOM05D002537 ORTHO05D002751 5.4e-23 110.9 94 66.0
Thecc.02G193200 Theobroma cacao HOM05D002537 ORTHO05D002751 5.4e-23 110.9 98 66.3
Gorai.002G021600 Gossypium raimondii HOM05D002537 ORTHO05D002751 1.2e-22 109.8 94 69.1
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 1.2e-22 109.8 92 63.0
ClCG06G001740 Citrullus lanatus HOM05D002537 ORTHO05D002751 1.6e-22 109.4 97 67.0
MELO3C022356.2 Cucumis melo HOM05D002537 ORTHO05D002751 1.6e-22 109.4 97 67.0
CsaV3_6G007760 Cucumis sativus L. HOM05D002537 ORTHO05D002751 1.6e-22 109.4 97 67.0
Gohir.A01G020800 Gossypium hirsutum HOM05D002537 ORTHO05D002751 2.7e-22 108.6 97 67.0
Sc11g0000120 Simmondsia chinensis HOM05D002537 ORTHO05D002751 4.6e-22 107.8 94 62.8
Haze_12497 Corylus avellana HOM05D002537 ORTHO05D002751 6.0e-22 107.5 94 64.9
Sabra03G0118500 Salix brachista HOM05D002537 ORTHO05D002751 7.8e-22 107.1 94 62.8
Sed0006357 Sechium edule HOM05D002537 ORTHO05D002751 1.0e-21 106.7 96 63.5
TWI18G1224 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.7e-21 105.9 95 65.3
Actinidia30589 Actinidia chinensis HOM05D002537 ORTHO05D002751 3.0e-21 105.1 94 64.9
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.1e-20 103.2 93 62.4
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 1.1e-20 103.2 96 62.5
Cc11_g15070 Coffea canephora HOM05D002537 ORTHO05D002751 1.5e-20 102.8 98 58.2
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.5e-20 102.8 93 62.4
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 1.5e-20 102.8 93 62.4
MD16G1130200 Malus domestica HOM05D002537 ORTHO05D002751 1.9e-20 102.4 92 63.0
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 2.5e-20 102.1 96 60.4
Medtr1g112650 Medicago truncatula HOM05D002537 ORTHO05D002751 3.3e-20 101.7 98 66.3
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.3e-20 101.3 94 58.5
Peaxi162Scf00128g01777 Petunia axillaris HOM05D002537 ORTHO05D002751 7.3e-20 100.5 96 58.3
TAR374G1592 Trochodendron aralioides HOM05D002537 ORTHO05D002751 7.3e-20 100.5 96 61.5
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.2e-19 99.8 96 59.4
TAR475G0008 Trochodendron aralioides HOM05D002537 ORTHO05D002751 1.6e-19 99.4 92 66.3
Prupe.1G216100 Prunus persica HOM05D002537 ORTHO05D002751 2.1e-19 99.0 94 59.6
Nn4g22137 Nelumbo nucifera HOM05D002537 ORTHO05D002751 2.8e-19 98.6 94 60.6
ATR0582G285 Amborella trichopoda HOM05D002537 ORTHO05D002751 3.6e-19 98.2 94 56.4
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 3.6e-19 98.2 94 58.5
Actinidia22118 Actinidia chinensis HOM05D002537 ORTHO05D002751 4.7e-19 97.8 91 64.8
PGR119G1955 Punica granatum HOM05D002537 ORTHO05D002751 4.7e-19 97.8 98 59.2
CAN.G124.2 Capsicum annuum HOM05D002537 ORTHO05D002751 6.2e-19 97.4 96 57.3
TAR622G0948 Trochodendron aralioides HOM05D002537 ORTHO05D002751 8.1e-19 97.1 94 60.6
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 3.1e-18 95.1 92 58.7
Lalb_Chr04g0258121 Lupinus albus HOM05D002537 ORTHO05D002751 5.2e-18 94.4 76 72.4
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 1.2e-17 93.2 94 59.6
Eucgr.B03553 Eucalyptus grandis HOM05D002537 ORTHO05D002751 1.5e-17 92.8 95 57.9
Lj6A837G33 Lonicera japonica HOM05D002537 ORTHO05D002751 3.4e-17 91.7 94 55.3
RcHm_v2.0_Chr2g0112661 Rosa chinensis HOM05D002537 ORTHO05D002751 5.8e-17 90.9 84 59.5
MBI10_g39274_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 9.9e-17 90.1 95 58.9
EL10Ac6g13606 Beta vulgaris HOM05D002537 ORTHO05D002751 1.3e-16 89.7 102 54.9
C04p15530 Brassica napus HOM05D002537 ORTHO05D002751 2.2e-16 89.0 97 56.7
AUR62028844 Chenopodium quinoa HOM05D002537 ORTHO05D002751 2.2e-16 89.0 94 57.4
CDE05G3192 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 3.7e-16 88.2 93 58.1
SalBow2G0780 Salvia bowleyana HOM05D002537 ORTHO05D002751 1.4e-15 86.3 100 54.0
BolC4t23124H Brassica oleracea HOM05D002537 ORTHO05D002751 3.2e-15 85.1 97 53.6
CDE05G0009 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 3.2e-15 85.1 93 55.9
Aqoxy5G03143 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 2.7e-14 82.0 97 57.7
MBI07_g41899_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 2.7e-14 82.0 95 54.7
Sopen04g017230 Solanum pennellii HOM05D002537 ORTHO05D002751 2.7e-14 82.0 93 52.7
Solyc04g045430.4 Solanum lycopersicum HOM05D002537 ORTHO05D002751 7.8e-14 80.5 93 51.6
MSTRG.457 Avicennia marina HOM05D002537 ORTHO05D002751 1.3e-13 79.7 94 52.1
A05p11980 Brassica napus HOM05D002537 ORTHO05D002751 1.3e-13 79.7 97 49.5
THA.LOC104812603 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 2.3e-13 79.0 99 49.5
BcaB06g28696 Brassica carinata HOM05D002537 ORTHO05D002751 3.0e-13 78.6 100 48.0
Actinidia25525 Actinidia chinensis HOM05D002537 ORTHO05D002751 3.9e-13 78.2 96 51.0
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 5.1e-13 77.8 94 50.0
AL4G29220 Arabidopsis lyrata HOM05D002537 ORTHO05D002751 5.1e-13 77.8 101 48.5
Sp4g15890 Schrenkiella parvula HOM05D002537 ORTHO05D002751 6.6e-13 77.4 98 48.0
CSS0030889 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 8.6e-13 77.0 93 52.7
CARHR127560 Cardamine hirsuta HOM05D002537 ORTHO05D002751 8.6e-13 77.0 92 48.9
BraA05t20141Z Brassica rapa HOM05D002537 ORTHO05D002751 1.1e-12 76.6 98 49.0
Oeu058895.1 Olea europaea HOM05D002537 ORTHO05D002751 1.1e-12 76.6 98 48.0
THA.LOC104814208 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 1.9e-12 75.9 61 65.6
BcaB02g10573 Brassica carinata HOM05D002537 ORTHO05D002751 4.3e-12 74.7 99 47.5
HPP92_023028 Vanilla planifolia HOM05D002537 ORTHO05D002751 5.6e-12 74.3 98 43.9
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 7.3e-12 73.9 92 51.1
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 7.3e-12 73.9 99 48.5
Migut.K01061 Erythranthe guttata HOM05D002537 ORTHO05D002751 9.6e-12 73.6 62 56.5
Aa31LG9G13480 Aethionema arabicum HOM05D002537 ORTHO05D002751 1.6e-11 72.8 66 54.5
A04p25830 Brassica napus HOM05D002537 ORTHO05D002751 1.6e-11 72.8 100 45.0
C04p63060 Brassica napus HOM05D002537 ORTHO05D002751 1.6e-11 72.8 100 45.0
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 2.1e-11 72.4 96 47.9
PGSC0003DMG400037032 Solanum tuberosum HOM05D002537 ORTHO05D002751 2.1e-11 72.4 80 52.5
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 2.1e-11 72.4 97 44.3
unitig_22.g6378 Utricularia gibba HOM05D002537 ORTHO05D002751 2.8e-11 72.0 99 46.5
ECA234G1825 Erigeron canadensis HOM05D002537 ORTHO05D002751 3.6e-11 71.6 91 47.3
AT2G33550 Arabidopsis thaliana HOM05D002537 ORTHO05D002751 6.2e-11 70.9 100 46.0
BcaC02g07801 Brassica carinata HOM05D002537 ORTHO05D002751 8.1e-11 70.5 100 44.0
BolC4t27781H Brassica oleracea HOM05D002537 ORTHO05D002751 8.1e-11 70.5 100 44.0
BraA04t18085Z Brassica rapa HOM05D002537 ORTHO05D002751 8.1e-11 70.5 100 44.0
BcaB06g28695 Brassica carinata HOM05D002537 ORTHO05D002751 1.1e-10 70.1 100 44.0
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 1.1e-10 70.1 96 47.9
SHI04124 Sapria himalayana HOM05D002537 ORTHO05D002751 1.1e-10 70.1 95 45.3
Lsat_1_v5_gn_4_1480 Lactuca sativa HOM05D002537 ORTHO05D002751 1.4e-10 69.7 61 59.0
Carub.0004s1518 Capsella rubella HOM05D002537 ORTHO05D002751 1.8e-10 69.3 101 45.5
Thhalv10016974m.g Eutrema salsugineum HOM05D002537 ORTHO05D002751 2.4e-10 68.9 103 42.7
HanXRQChr12g0384721 Helianthus annuus HOM05D002537 ORTHO05D002751 3.1e-10 68.6 61 55.7
PGSC0003DMG400037364 Solanum tuberosum HOM05D002537 ORTHO05D002751 3.1e-10 68.6 92 43.5
CDE02G2776 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 4.0e-10 68.2 93 44.1
CDE06G0988 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 4.0e-10 68.2 93 41.9
PGR102G0822 Punica granatum HOM05D002537 ORTHO05D002751 4.0e-10 68.2 95 47.4
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 5.2e-10 67.8 93 47.3
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 5.2e-10 67.8 97 44.3
PSO017G5279 Papaver somniferum HOM05D002537 ORTHO05D002751 6.8e-10 67.4 110 40.9
PSO478G1702 Papaver somniferum HOM05D002537 ORTHO05D002751 6.8e-10 67.4 110 41.8
Lj9C486T16 Lonicera japonica HOM05D002537 ORTHO05D002751 8.9e-10 67.0 95 46.3
Os04g0397500 Oryza sativa ssp. japonica HOM05D002537 ORTHO05D002751 8.9e-10 67.0 64 54.7
Duzib084G0396 Durio zibethinus HOM05D002537 ORTHO05D002751 1.5e-09 66.2 93 45.2
Prupe.5G142400 Prunus persica HOM05D002537 ORTHO05D002751 2.6e-09 65.5 80 48.8
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 2.6e-09 65.5 94 40.4
SEGI_15899 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 5.8e-09 64.3 95 44.2
Oeu013658.5 Olea europaea HOM05D002537 ORTHO05D002751 9.9e-09 63.5 97 45.4
Sopen09g008430 Solanum pennellii HOM05D002537 ORTHO05D002751 9.9e-09 63.5 85 41.2
BcaC02g07800 Brassica carinata HOM05D002537 ORTHO05D002751 1.3e-08 63.2 95 43.2
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 2.2e-08 62.4 82 46.3
RcHm_v2.0_Chr7g0188751 Rosa chinensis HOM05D002537 ORTHO05D002751 2.9e-08 62.0 83 43.4
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 3.8e-08 61.6 94 45.7
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 4.9e-08 61.2 96 42.7
MD06G1131400 Malus domestica HOM05D002537 ORTHO05D002751 4.9e-08 61.2 90 43.3
arahy.Tifrunner.gnm1.ann1.Q6HYPX Arachis hypogaea HOM05D002537 ORTHO05D002751 6.4e-08 60.8 93 38.7
Sabra15G0126000 Salix brachista HOM05D002537 ORTHO05D002751 6.4e-08 60.8 94 42.6
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 8.4e-08 60.5 96 42.7
arahy.Tifrunner.gnm1.ann1.85CPFH Arachis hypogaea HOM05D002537 ORTHO05D002751 1.4e-07 59.7 93 37.6
ATR0626G112 Amborella trichopoda HOM05D002537 ORTHO05D002751 1.9e-07 59.3 93 34.4
HanXRQChr16g0529341 Helianthus annuus HOM05D002537 ORTHO05D002751 3.2e-07 58.5 75 44.0
MD14G1147800 Malus domestica HOM05D002537 ORTHO05D002751 3.2e-07 58.5 90 43.3
FAN04G1977 Fragaria x ananassa HOM05D002537 ORTHO05D002751 4.2e-07 58.2 94 39.4
Glyma.05G200400 Glycine max HOM05D002537 ORTHO05D002751 5.4e-07 57.8 75 46.7
Solyc01g065900.3 Solanum lycopersicum HOM05D002537 ORTHO05D002751 5.4e-07 57.8 66 47.0
Lalb_Chr12g0202481 Lupinus albus HOM05D002537 ORTHO05D002751 7.1e-07 57.4 80 42.5
VMungo0251G0975 Vigna mungo HOM05D002537 ORTHO05D002751 7.1e-07 57.4 75 42.7
FvH4_5g09440 Fragaria vesca HOM05D002537 ORTHO05D002751 9.3e-07 57.0 94 38.3
FAN18G1947 Fragaria x ananassa HOM05D002537 ORTHO05D002751 9.3e-07 57.0 94 38.3
ATR0736G114 Amborella trichopoda HOM05D002537 ORTHO05D002751 1.2e-06 56.6 65 49.2
FAN08G1434 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.6e-06 56.2 94 38.3
AUR62044304 Chenopodium quinoa HOM05D002537 ORTHO05D002751 2.7e-06 55.5 80 40.0
Migut.D01185 Erythranthe guttata HOM05D002537 ORTHO05D002751 2.7e-06 55.5 95 36.8
Hund02506 Selenicereus undatus HOM05D002537 ORTHO05D002751 2.7e-06 55.5 80 40.0
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 3.5e-06 55.1 96 39.6
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 3.5e-06 55.1 96 39.6
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 4.6e-06 54.7 96 38.5
Medtr8g100130 Medicago truncatula HOM05D002537 ORTHO05D002751 4.6e-06 54.7 75 41.3
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.6e-06 54.7 96 41.7
Phvul.002G281800 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 7.8e-06 53.9 75 41.3


User provided reference genes

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