Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G357 Trifolium pratense HOM05D038100 ORTHO05D036767 0.0e+00 1230.3 605 100.0
Medtr8g080450 Medicago truncatula HOM05D038100 ORTHO05D036767 1.1e-57 228.8 454 35.2
Medtr5g069070 Medicago truncatula HOM05D038100 ORTHO05D036767 1.3e-42 178.7 546 29.1
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-31 142.5 338 30.5
TPR.G3986 Trifolium pratense HOM05D002342 ORTHO05D002407 1.1e-25 122.5 384 28.1
Medtr4g082295 Medicago truncatula HOM05D002342 ORTHO05D002407 2.7e-19 101.3 110 46.4
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 6.2e-16 90.1 121 42.1
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.5e-14 85.5 116 41.4
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.5e-14 84.0 121 40.5
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 4.5e-14 84.0 121 40.5
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 4.5e-14 84.0 121 40.5
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.5e-14 84.0 121 40.5
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 4.5e-14 84.0 121 40.5
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 5.8e-14 83.6 116 41.4
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 5.8e-14 83.6 116 41.4
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 7.6e-14 83.2 116 40.5
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.3e-13 82.4 106 40.6
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.7e-13 82.0 116 39.7
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.7e-13 82.0 116 39.7
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.7e-13 82.0 94 46.8
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.7e-13 82.0 121 39.7
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.9e-13 81.3 120 39.2
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 3.8e-13 80.9 121 40.5
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 3.8e-13 80.9 116 38.8
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 3.8e-13 80.9 122 38.5
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 8.4e-13 79.7 116 38.8
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 8.4e-13 79.7 115 33.9
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.1e-12 79.3 116 40.5
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.4e-12 79.0 107 42.1
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.9e-12 78.6 121 34.7
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.9e-12 78.6 121 39.7
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 1.9e-12 78.6 224 28.6
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.9e-12 78.6 121 35.5
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 1.9e-12 78.6 120 37.5
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 2.4e-12 78.2 107 40.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.4e-12 78.2 107 40.2
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.4e-12 78.2 110 34.5
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.2e-12 77.8 106 41.5
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 3.2e-12 77.8 123 35.8
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 4.2e-12 77.4 116 37.1
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 5.4e-12 77.0 118 38.1
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 7.1e-12 76.6 145 33.8
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 7.1e-12 76.6 122 38.5
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 9.3e-12 76.3 120 35.0
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 9.3e-12 76.3 126 33.3
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.2e-11 75.9 115 40.0
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 1.6e-11 75.5 100 36.0
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-11 75.5 120 38.3
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 2.1e-11 75.1 104 38.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.7e-11 74.7 120 38.3
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.7e-11 74.7 110 39.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 4.6e-11 73.9 131 38.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 4.6e-11 73.9 120 32.5
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 4.6e-11 73.9 101 39.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.6e-11 73.9 101 39.6
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.6e-11 73.9 101 39.6
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 4.6e-11 73.9 119 35.3
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 4.6e-11 73.9 119 35.3
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 4.6e-11 73.9 119 35.3
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 6.0e-11 73.6 117 37.6
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 6.0e-11 73.6 122 37.7
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 6.0e-11 73.6 107 39.3
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 6.0e-11 73.6 243 27.2
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 7.9e-11 73.2 119 37.8
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 7.9e-11 73.2 120 38.3
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 7.9e-11 73.2 115 37.4
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 7.9e-11 73.2 128 35.2
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.0e-10 72.8 140 32.9
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 1.0e-10 72.8 130 36.2
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-10 72.8 124 37.1
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.0e-10 72.8 130 35.4
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-10 72.4 101 38.6
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.3e-10 72.4 114 34.2
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 1.3e-10 72.4 130 36.2
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 1.3e-10 72.4 101 36.6
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.8e-10 72.0 115 34.8
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.8e-10 72.0 128 31.2
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.8e-10 72.0 123 37.4
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 1.8e-10 72.0 130 32.3
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.8e-10 72.0 129 34.9
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.8e-10 72.0 106 37.7
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 2.3e-10 71.6 111 39.6
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 2.3e-10 71.6 111 37.8
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 2.3e-10 71.6 111 37.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 2.3e-10 71.6 111 37.8
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 2.3e-10 71.6 121 37.2
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.3e-10 71.6 131 36.6
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.3e-10 71.6 112 36.6
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 2.3e-10 71.6 111 34.2
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.0e-10 71.2 110 35.5
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.0e-10 71.2 107 36.4
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 3.0e-10 71.2 118 35.6
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 3.0e-10 71.2 115 39.1
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 3.0e-10 71.2 88 42.0
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.0e-10 71.2 107 37.4
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 3.0e-10 71.2 101 39.6
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 3.9e-10 70.9 107 38.3
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-10 70.9 86 44.2
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-10 70.9 86 44.2
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.9e-10 70.9 120 36.7
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 5.1e-10 70.5 112 39.3
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 5.1e-10 70.5 96 38.5
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 5.1e-10 70.5 130 35.4
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 5.1e-10 70.5 107 39.3
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 6.7e-10 70.1 106 38.7
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 8.7e-10 69.7 168 29.8
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 8.7e-10 69.7 257 28.0
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 8.7e-10 69.7 122 36.1
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.1e-09 69.3 120 35.8
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-09 69.3 112 37.5
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.5e-09 68.9 120 34.2
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.5e-09 68.9 121 35.5
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.5e-09 68.9 104 35.6
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 1.5e-09 68.9 129 36.4
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.9e-09 68.6 106 37.7
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 1.9e-09 68.6 126 34.1
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.9e-09 68.6 107 39.3
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.5e-09 68.2 109 41.3
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 2.5e-09 68.2 112 34.8
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 3.3e-09 67.8 112 36.6
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.3e-09 67.8 123 36.6
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 4.3e-09 67.4 119 32.8
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 4.3e-09 67.4 93 41.9
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 4.3e-09 67.4 115 35.7
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 4.3e-09 67.4 122 34.4
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 4.3e-09 67.4 101 36.6
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 4.3e-09 67.4 120 35.0
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.3e-09 67.4 115 35.7
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.3e-09 67.4 93 40.9
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 5.6e-09 67.0 130 33.8
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.4e-09 66.6 120 35.8
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.6e-09 66.2 167 31.1
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 9.6e-09 66.2 153 30.7
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.3e-08 65.9 121 33.9
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.3e-08 65.9 90 38.9
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.3e-08 65.9 130 35.4
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.6e-08 65.5 88 42.0
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.6e-08 65.5 120 33.3
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.1e-08 65.1 135 32.6
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.1e-08 65.1 135 32.6
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.1e-08 65.1 135 32.6
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 2.8e-08 64.7 120 33.3
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.8e-08 64.7 121 33.9
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 3.7e-08 64.3 121 33.1
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 3.7e-08 64.3 121 33.1
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 3.7e-08 64.3 100 40.0
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 3.7e-08 64.3 128 32.0
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 4.8e-08 63.9 223 26.9
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 4.8e-08 63.9 130 34.6
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 6.2e-08 63.5 126 34.1
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.2e-08 63.5 120 31.7
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.2e-08 63.5 120 30.0
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 6.2e-08 63.5 131 31.3
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.1e-08 63.2 177 33.3
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 8.1e-08 63.2 114 32.5
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 8.1e-08 63.2 114 32.5
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.1e-07 62.8 79 40.5
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-07 62.8 135 32.6
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-07 62.8 89 36.0
Medtr8g038765 Medicago truncatula HOM05D056746 ORTHO05D002407 1.1e-07 62.8 139 33.1
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 1.4e-07 62.4 112 34.8
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.8e-07 62.0 165 30.9
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.4e-07 61.6 114 36.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 2.4e-07 61.6 123 33.3
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.4e-07 61.6 187 27.8
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.1e-07 61.2 121 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 9.0e-07 59.7 115 31.3
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 9.0e-07 59.7 120 30.8
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 9.0e-07 59.7 120 30.8
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 9.0e-07 59.7 120 30.8
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 9.0e-07 59.7 128 32.8
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 9.0e-07 59.7 110 27.3
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 5.8e-06 57.0 80 41.2


User provided reference genes

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