Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-30 136.0 71 100.0
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.3e-23 111.7 65 86.2
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.3e-23 111.7 65 87.7
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-22 109.0 65 84.6
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.6e-22 108.2 70 81.4
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 3.4e-22 107.8 65 84.6
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-21 105.5 65 81.5
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.7e-21 105.5 62 85.5
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.2e-21 105.1 63 84.1
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.9e-21 104.8 64 82.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-21 104.8 61 86.9
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 6.4e-21 103.6 69 76.8
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 6.4e-21 103.6 64 82.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.3e-21 103.2 63 82.5
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.3e-21 103.2 65 81.5
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.1e-20 102.8 70 78.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.4e-20 102.4 59 83.1
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.9e-20 102.1 70 77.1
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.9e-20 102.1 65 81.5
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.4e-20 101.7 64 79.7
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.2e-20 101.3 61 82.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 3.2e-20 101.3 63 81.0
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.2e-20 101.3 63 81.0
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.1e-20 100.9 70 77.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 5.4e-20 100.5 61 80.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 9.2e-20 99.8 65 78.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 9.2e-20 99.8 65 78.5
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 9.2e-20 99.8 64 78.1
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 9.2e-20 99.8 64 78.1
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-19 99.4 63 79.4
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.2e-19 99.4 65 75.4
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.2e-19 99.4 63 77.8
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.6e-19 99.0 65 76.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.6e-19 99.0 62 79.0
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.6e-19 99.0 64 76.6
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.7e-19 98.2 65 75.4
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.7e-19 98.2 61 77.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.7e-19 98.2 61 80.3
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.5e-19 97.8 64 79.7
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 3.5e-19 97.8 64 76.6
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.5e-19 97.8 65 76.9
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 3.5e-19 97.8 64 76.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 4.6e-19 97.4 64 76.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 4.6e-19 97.4 64 76.6
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 4.6e-19 97.4 58 82.8
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.6e-19 97.4 64 76.6
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.6e-19 97.4 65 76.9
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 4.6e-19 97.4 65 76.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.6e-19 97.4 64 79.7
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 4.6e-19 97.4 64 75.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 6.0e-19 97.1 64 76.6
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 6.0e-19 97.1 63 76.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 6.0e-19 97.1 65 75.4
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.0e-19 97.1 60 80.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 6.0e-19 97.1 64 78.1
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 6.0e-19 97.1 64 76.6
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.0e-18 96.3 65 75.4
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.0e-18 96.3 63 76.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.0e-18 96.3 70 74.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.0e-18 96.3 70 74.3
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.0e-18 96.3 65 72.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.3e-18 95.9 64 76.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.3e-18 95.9 55 83.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.7e-18 95.5 64 73.4
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.3e-18 95.1 65 75.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.3e-18 95.1 65 75.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-18 95.1 64 75.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-18 95.1 64 75.0
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.3e-18 95.1 58 81.0
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 2.3e-18 95.1 62 74.2
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.0e-18 94.7 64 73.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.9e-18 94.4 74 70.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.9e-18 94.4 65 75.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 5.1e-18 94.0 65 72.3
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 5.1e-18 94.0 65 72.3
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.1e-18 94.0 66 74.2
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 5.1e-18 94.0 64 76.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.1e-18 94.0 64 75.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.1e-18 94.0 64 73.4
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.6e-18 93.6 58 79.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 6.6e-18 93.6 62 75.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.6e-18 93.6 62 75.8
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.6e-18 93.2 65 72.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 8.6e-18 93.2 64 73.4
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 8.6e-18 93.2 63 74.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 8.6e-18 93.2 63 74.6
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.6e-18 93.2 62 75.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 8.6e-18 93.2 58 81.0
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.1e-17 92.8 62 75.8
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.5e-17 92.4 64 73.4
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.5e-17 92.4 64 75.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.9e-17 92.0 64 71.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.9e-17 92.0 64 71.9
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.9e-17 92.0 58 77.6
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.5e-17 91.7 66 72.7
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.5e-17 91.7 60 75.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.3e-17 91.3 66 71.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 3.3e-17 91.3 61 77.0
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 4.3e-17 90.9 59 76.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 4.3e-17 90.9 59 76.3
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.6e-17 90.5 59 76.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 5.6e-17 90.5 64 73.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.3e-17 90.1 59 74.6
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 7.3e-17 90.1 59 74.6
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 7.3e-17 90.1 63 71.4
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 9.5e-17 89.7 59 74.6
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 9.5e-17 89.7 58 77.6
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.2e-16 89.4 59 74.6
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.2e-16 89.4 59 76.3
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.1e-16 88.6 59 74.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 2.1e-16 88.6 64 71.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 4.7e-16 87.4 59 74.6
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 4.7e-16 87.4 59 74.6
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.2e-16 87.0 65 69.2
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 6.2e-16 87.0 58 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 8.1e-16 86.7 66 68.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 8.1e-16 86.7 60 73.3
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.1e-15 86.3 55 74.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.1e-15 86.3 64 70.3
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.4e-15 85.9 59 74.6
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.4e-15 85.9 59 72.9
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.3e-15 85.1 53 81.1
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.0e-15 84.3 63 68.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.4e-14 81.3 56 66.1
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 4.4e-14 80.9 51 82.4
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 9.9e-14 79.7 60 66.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-11 72.8 58 63.8
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-11 72.8 50 70.0
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 8.6e-10 66.6 52 63.5
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 4.3e-09 64.3 54 55.6
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 6.2e-08 60.5 35 80.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 8.9e-07 56.6 37 78.4


User provided reference genes

Program Settings