Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 6.8e-57 223.8 114 100.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.9e-46 189.1 114 84.2
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 3.7e-39 164.9 93 86.0
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 7.8e-37 157.1 114 73.7
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 8.1e-34 147.1 114 67.5
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.1e-33 146.7 114 65.8
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.4e-33 146.4 114 67.5
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-33 146.4 114 67.5
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 6.8e-33 144.1 114 65.8
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 7.6e-32 140.6 114 64.9
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.7e-31 139.4 115 65.2
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 9.2e-30 133.7 114 65.8
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 4.6e-29 131.3 114 61.4
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 6.0e-29 131.0 113 62.8
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 7.8e-29 130.6 113 62.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.0e-28 130.2 81 80.2
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 9.6e-27 123.6 114 60.5
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 1.6e-26 122.9 109 58.7
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 3.6e-26 121.7 113 57.5
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 8.1e-26 120.6 115 62.6
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 8.1e-26 120.6 113 57.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.1e-25 120.2 112 58.0
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.6e-24 115.5 110 57.3
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.4e-24 115.2 114 56.1
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 4.4e-24 114.8 105 61.0
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 9.9e-24 113.6 112 52.7
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.2e-23 112.5 105 56.2
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.2e-23 112.5 96 66.7
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 3.8e-23 111.7 105 58.1
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 3.8e-23 111.7 114 57.0
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 1.4e-22 109.8 111 51.4
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.4e-22 109.0 98 58.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.2e-22 108.6 100 57.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 4.2e-22 108.2 112 53.6
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 4.2e-22 108.2 112 53.6
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 9.3e-22 107.1 107 53.3
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 2.1e-21 105.9 114 52.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 4.6e-21 104.8 105 52.4
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 4.6e-21 104.8 105 52.4
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.0e-20 103.6 110 51.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.9e-20 101.7 105 51.4
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 6.6e-20 100.9 112 49.1
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.1e-19 100.1 114 52.6
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.9e-19 99.4 78 67.9
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.5e-19 99.0 112 46.4
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 3.3e-19 98.6 107 47.7
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 3.3e-19 98.6 111 47.7
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 3.3e-19 98.6 111 47.7
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 3.3e-19 98.6 112 45.5
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 5.6e-19 97.8 111 46.8
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 5.6e-19 97.8 112 45.5
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 5.6e-19 97.8 112 45.5
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 5.6e-19 97.8 112 45.5
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.3e-18 96.7 102 52.9
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.3e-18 96.7 111 47.7
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.6e-18 96.3 112 46.4
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 2.1e-18 95.9 112 45.5
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 3.6e-18 95.1 112 47.3
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 3.6e-18 95.1 111 45.9
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 1.1e-17 93.6 104 49.0
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.1e-17 93.6 102 52.0
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 6.9e-17 90.9 90 53.3
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 6.9e-17 90.9 98 51.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 9.0e-17 90.5 113 48.7
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 2.0e-16 89.4 98 49.0
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.6e-16 89.0 97 53.6
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 4.5e-16 88.2 103 46.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 7.6e-16 87.4 109 43.1
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 4.9e-15 84.7 106 49.1
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 4.9e-15 84.7 98 48.0
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 4.9e-15 84.7 107 46.7
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 8.4e-15 84.0 111 41.4
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 8.4e-15 84.0 112 44.6
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 8.4e-15 84.0 97 44.3
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.4e-14 83.2 105 43.8
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 1.9e-14 82.8 103 47.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-14 82.8 107 44.9
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.4e-14 82.4 98 44.9
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 2.4e-14 82.4 112 44.6
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 2.4e-14 82.4 112 44.6
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 7.1e-14 80.9 99 44.4
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 9.3e-14 80.5 112 43.8
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 9.3e-14 80.5 112 43.8
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 3.5e-13 78.6 112 42.0
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 7.9e-13 77.4 103 41.7
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 7.9e-13 77.4 90 42.2
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.8e-12 76.3 78 53.8
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 1.9e-11 72.8 112 39.3
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 5.6e-11 71.2 108 41.7
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.1e-10 69.3 113 38.9
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.1e-09 67.0 113 38.1
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.4e-09 66.6 109 36.7
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 1.8e-09 66.2 102 38.2
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.9e-09 64.3 74 48.6
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 9.0e-09 63.9 101 41.6
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.5e-08 63.2 103 36.9


User provided reference genes

Program Settings