Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35674 Trifolium pratense HOM05D001944 ORTHO05D002405 6.1e-48 193.7 92 100.0
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 8.2e-29 130.2 85 78.8
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-27 126.3 84 78.6
Ca_08850_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 6.5e-26 120.6 84 72.6
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.9e-25 119.0 84 76.2
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 2.5e-25 118.6 83 75.9
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-24 115.9 84 73.8
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 8.0e-24 113.6 86 66.3
Phvul.001G177901 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 8.8e-23 110.2 85 67.1
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 2.6e-22 108.6 86 66.3
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 9.8e-22 106.7 85 64.7
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 1.8e-20 102.4 84 64.3
TPR.G35671 Trifolium pratense HOM05D001944 ORTHO05D002405 1.6e-19 99.4 81 60.5
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.4e-15 86.3 80 56.2
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.8e-15 85.9 80 56.2
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 1.8e-15 85.9 84 57.1
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 2.3e-15 85.5 84 57.1
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 4.4e-14 81.3 82 57.3
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 4.4e-14 81.3 82 57.3
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 1.3e-13 79.7 82 54.9
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.3e-13 77.0 84 56.0
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 1.1e-12 76.6 84 51.2
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 1.1e-12 76.6 84 51.2
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.4e-12 76.3 84 53.6
CDE02G2939 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 1.8e-12 75.9 84 51.2
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 1.8e-12 75.9 89 47.2
VMungo1080G0782 Vigna mungo HOM05D001944 ORTHO05D002405 1.8e-12 75.9 84 47.6
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.4e-12 75.5 84 50.0
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 2.4e-12 75.5 84 50.0
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 5.4e-12 74.3 82 53.7
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 5.4e-12 74.3 82 52.4
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 7.0e-12 73.9 84 51.2
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 7.0e-12 73.9 83 51.8
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 9.2e-12 73.6 84 51.2
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 9.2e-12 73.6 84 48.8
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 9.2e-12 73.6 84 47.6
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 1.2e-11 73.2 81 49.4
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.6e-11 72.8 84 50.0
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.6e-11 72.8 83 49.4
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.6e-11 72.8 81 45.7
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.6e-11 72.8 83 50.6
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 2.0e-11 72.4 84 45.2
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 2.7e-11 72.0 83 49.4
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 4.5e-11 71.2 84 50.0
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 4.5e-11 71.2 83 47.0
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 4.5e-11 71.2 83 47.0
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 5.9e-11 70.9 84 45.2
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 5.9e-11 70.9 84 45.2
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 5.9e-11 70.9 83 45.8
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 5.9e-11 70.9 78 50.0
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 7.8e-11 70.5 83 48.2
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 7.8e-11 70.5 83 48.2
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 1.0e-10 70.1 84 41.7
Sed0024099 Sechium edule HOM05D001944 ORTHO05D002405 1.0e-10 70.1 84 48.8
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 1.3e-10 69.7 83 49.4
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 1.3e-10 69.7 81 46.9
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.3e-10 69.7 83 48.2
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 1.3e-10 69.7 80 45.0
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.3e-10 69.7 83 48.2
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 1.7e-10 69.3 85 48.2
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 1.7e-10 69.3 84 47.6
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 1.7e-10 69.3 84 47.6
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 1.7e-10 69.3 83 47.0
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.7e-10 69.3 83 47.0
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.7e-10 69.3 83 47.0
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.7e-10 69.3 83 47.0
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 1.7e-10 69.3 83 44.6
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.3e-10 68.9 83 50.6
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.3e-10 68.9 80 45.0
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 2.3e-10 68.9 83 47.0
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 2.3e-10 68.9 82 43.9
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 2.9e-10 68.6 89 42.7
PSO732G0413 Papaver somniferum HOM05D001944 ORTHO05D002405 2.9e-10 68.6 88 46.6
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 3.8e-10 68.2 84 48.8
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 3.8e-10 68.2 83 47.0
PSO732G0719 Papaver somniferum HOM05D001944 ORTHO05D002405 3.8e-10 68.2 89 43.8
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.8e-10 68.2 83 49.4
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 5.0e-10 67.8 80 45.0
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 6.6e-10 67.4 89 42.7
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 6.6e-10 67.4 85 43.5
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 6.6e-10 67.4 83 48.2
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 6.6e-10 67.4 87 39.1
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.1e-09 66.6 80 46.2
Lj2A114T42 Lonicera japonica HOM05D001944 ORTHO05D002405 1.1e-09 66.6 80 45.0
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 1.1e-09 66.6 86 43.0
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 1.1e-09 66.6 83 42.2
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 1.1e-09 66.6 84 46.4
PSO732G0800 Papaver somniferum HOM05D001944 ORTHO05D002405 1.5e-09 66.2 89 43.8
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.5e-09 66.2 83 47.0
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 1.5e-09 66.2 83 43.4
arahy.Tifrunner.gnm1.ann1.LUG37R Arachis hypogaea HOM05D001944 ORTHO05D002405 1.9e-09 65.9 80 43.8
arahy.Tifrunner.gnm1.ann1.R0WL9G Arachis hypogaea HOM05D001944 ORTHO05D002405 1.9e-09 65.9 80 43.8
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.9e-09 65.9 81 44.4
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 1.9e-09 65.9 83 44.6
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.9e-09 65.9 83 47.0
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 1.9e-09 65.9 60 56.7
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 2.5e-09 65.5 83 44.6
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.5e-09 65.5 80 43.8
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 4.3e-09 64.7 80 43.8
SEGI_40050 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 4.3e-09 64.7 80 45.0
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 4.3e-09 64.7 84 46.4
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 5.6e-09 64.3 83 44.6
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 5.6e-09 64.3 83 44.6
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 5.6e-09 64.3 83 43.4
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 7.3e-09 63.9 81 43.2
PSO675G2075 Papaver somniferum HOM05D001944 ORTHO05D002405 7.3e-09 63.9 89 42.7
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 7.3e-09 63.9 83 43.4
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 9.5e-09 63.5 83 47.0
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 9.5e-09 63.5 81 45.7
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.2e-08 63.2 82 45.1
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 1.2e-08 63.2 81 44.4
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.6e-08 62.8 82 46.3
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.6e-08 62.8 82 43.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 1.6e-08 62.8 80 42.5
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 1.6e-08 62.8 81 42.0
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.1e-08 62.4 80 45.0
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 2.1e-08 62.4 82 43.9
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 2.1e-08 62.4 81 42.0
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 2.8e-08 62.0 83 48.2
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 2.8e-08 62.0 79 43.0
Hma1.2p1_0058F.1_g032360 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 3.6e-08 61.6 80 43.8
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 4.7e-08 61.2 83 41.0
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 4.7e-08 61.2 83 44.6
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.0e-07 60.1 81 40.7
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 1.0e-07 60.1 81 40.7
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 1.8e-07 59.3 83 41.0
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 3.0e-07 58.5 81 45.7
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.0e-07 58.5 84 46.4
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.0e-07 58.5 84 46.4
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 3.0e-07 58.5 84 46.4
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 3.0e-07 58.5 81 43.2
Psat0s1467g0160 Pisum sativum HOM05D001465 ORTHO05D002405 4.0e-07 58.2 35 77.1
Psat0s3521g0040 Pisum sativum HOM05D001944 ORTHO05D002405 4.0e-07 58.2 35 77.1
SEGI_24058 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 5.2e-07 57.8 84 41.7
SEGI_40731 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 5.2e-07 57.8 84 41.7
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 1.2e-06 56.6 83 45.8
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 2.0e-06 55.8 81 43.2
HanXRQChr13g0421871 Helianthus annuus HOM05D001944 ORTHO05D002405 2.0e-06 55.8 84 40.5
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 2.6e-06 55.5 80 38.8
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 2.6e-06 55.5 80 37.5
DCAR_006069 Daucus carota HOM05D001944 ORTHO05D002405 3.4e-06 55.1 83 41.0
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 7.5e-06 53.9 82 36.6


User provided reference genes

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