Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35612 Trifolium pratense HOM05D008660 ORTHO05D005910 1.9e-99 365.9 201 100.0
TPR.G34177 Trifolium pratense HOM05D000092 ORTHO05D005910 2.8e-37 159.5 194 50.5
Medtr3g062420 Medicago truncatula HOM05D000092 ORTHO05D005910 1.5e-35 153.7 186 52.2
TPR.G5137 Trifolium pratense HOM05D000092 ORTHO05D005910 7.5e-35 151.4 178 50.0
Medtr3g062320 Medicago truncatula HOM05D000092 ORTHO05D005910 2.9e-34 149.4 188 47.3
Medtr3g436180 Medicago truncatula HOM05D008660 ORTHO05D005910 2.9e-34 149.4 181 47.5
Psat5g155080 Pisum sativum HOM05D000092 ORTHO05D005910 3.7e-34 149.1 179 57.5
TPR.G27797 Trifolium pratense HOM05D008660 ORTHO05D013095 4.1e-33 145.6 182 47.8
Medtr3g467660 Medicago truncatula HOM05D008660 ORTHO05D005910 1.6e-32 143.7 172 59.9
Psat5g156120 Pisum sativum HOM05D008660 ORTHO05D005910 1.6e-32 143.7 185 57.3
Medtr3g451150 Medicago truncatula HOM05D000092 ORTHO05D005910 7.8e-32 141.4 184 56.5
Medtr3g452250 Medicago truncatula HOM05D000092 ORTHO05D005910 7.8e-32 141.4 184 56.5
Medtr3g062230 Medicago truncatula HOM05D008660 ORTHO05D005910 5.1e-31 138.7 179 46.4
Psat5g155240 Pisum sativum HOM05D000092 ORTHO05D005910 5.1e-31 138.7 179 56.4
Medtr3g063010 Medicago truncatula HOM05D000092 ORTHO05D005910 4.3e-30 135.6 188 44.7
Medtr3g466750 Medicago truncatula HOM05D000092 ORTHO05D005910 4.3e-30 135.6 170 47.6
TPR.G28601 Trifolium pratense HOM05D008660 ORTHO05D005910 5.6e-30 135.2 179 46.9
Medtr7g026240 Medicago truncatula HOM05D000092 ORTHO05D005910 9.5e-30 134.4 154 48.7
Medtr3g435040 Medicago truncatula HOM05D000092 ORTHO05D005910 3.6e-29 132.5 185 43.8
Medtr3g062090 Medicago truncatula HOM05D000092 ORTHO05D013095 4.7e-29 132.1 167 57.5
Medtr3g062980 Medicago truncatula HOM05D000092 ORTHO05D005910 1.2e-27 127.5 179 52.5
Lj1g0016459 Lotus japonicus HOM05D000092 ORTHO05D000042 3.4e-27 125.9 169 45.0
Medtr3g464870 Medicago truncatula HOM05D000092 ORTHO05D005910 1.4e-25 120.6 169 43.8
Medtr3g062340 Medicago truncatula HOM05D000092 ORTHO05D005910 2.4e-25 119.8 158 56.3
TPR.G5820 Trifolium pratense HOM05D000092 ORTHO05D005910 5.4e-25 118.6 230 41.7
Medtr3g464810 Medicago truncatula HOM05D000092 ORTHO05D000042 7.8e-24 114.8 168 51.8
TPR.G20665 Trifolium pratense HOM05D008660 ORTHO05D005910 1.3e-23 114.0 170 42.9
Psat5g149840 Pisum sativum HOM05D000092 ORTHO05D000042 3.9e-23 112.5 182 40.1
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.3e-22 109.4 178 52.2
Medtr3g062050 Medicago truncatula HOM05D008660 ORTHO05D005910 5.6e-22 108.6 137 60.6
Medtr0257s0040 Medicago truncatula HOM05D008660 ORTHO05D005910 7.3e-22 108.2 138 59.4
TPR.G22097 Trifolium pratense HOM05D008660 ORTHO05D005910 1.2e-21 107.5 162 42.6
TPR.G29425 Trifolium pratense HOM05D008660 ORTHO05D005910 1.2e-21 107.5 153 44.4
TPR.G27618 Trifolium pratense HOM05D008660 ORTHO05D005910 3.6e-21 105.9 165 41.8
TPR.G34386 Trifolium pratense HOM05D008660 ORTHO05D005910 1.1e-20 104.4 110 51.8
Medtr3g062140 Medicago truncatula HOM05D000092 ORTHO05D005910 4.0e-20 102.4 180 49.4
Medtr3g062180 Medicago truncatula HOM05D000092 ORTHO05D005910 4.0e-20 102.4 180 49.4
TPR.G27790 Trifolium pratense HOM05D008660 ORTHO05D013095 1.2e-19 100.9 133 43.6
TPR.G26594 Trifolium pratense HOM05D008660 ORTHO05D005910 2.6e-19 99.8 172 39.0
Medtr3g048593 Medicago truncatula HOM05D008660 ORTHO05D005910 2.2e-18 96.7 171 40.4
Psat5g150000 Pisum sativum HOM05D000092 ORTHO05D005910 4.9e-18 95.5 132 44.7
Psat5g150080 Pisum sativum HOM05D000092 ORTHO05D000042 1.6e-16 90.5 130 43.1
TPR.G105 Trifolium pratense HOM05D008660 ORTHO05D005910 2.1e-16 90.1 153 38.6
arahy.Tifrunner.gnm1.ann1.7K0XBP Arachis hypogaea HOM05D000092 ORTHO05D005910 6.0e-16 88.6 155 38.7
TPR.G15149 Trifolium pratense HOM05D000092 ORTHO05D005910 7.8e-16 88.2 160 38.1
arahy.Tifrunner.gnm1.ann1.K6KWHM Arachis hypogaea HOM05D000092 ORTHO05D011874 1.3e-15 87.4 103 48.5
TPR.G35614 Trifolium pratense HOM05D008660 ORTHO05D005910 2.3e-15 86.7 66 68.2
arahy.Tifrunner.gnm1.ann1.JFQB2B Arachis hypogaea HOM05D000092 ORTHO05D011874 8.7e-15 84.7 181 35.4
Medtr3g464820 Medicago truncatula HOM05D008660 ORTHO05D005910 1.1e-14 84.3 130 40.0
Medtr3g466530 Medicago truncatula HOM05D008660 ORTHO05D013095 3.3e-14 82.8 158 40.5
arahy.Tifrunner.gnm1.ann1.5157VP Arachis hypogaea HOM05D000092 ORTHO05D011874 9.6e-14 81.3 164 35.4
Glyma.14G008700 Glycine max HOM05D000092 ORTHO05D011874 1.6e-13 80.5 141 50.4
Lalb_Chr04g0250161 Lupinus albus HOM05D000092 ORTHO05D000042 2.8e-13 79.7 166 34.9
Phvul.008G284500 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.8e-13 79.0 83 50.6
VMungo0647G2334 Vigna mungo HOM05D000092 ORTHO05D011874 1.4e-12 77.4 87 48.3
Lj6g0021728 Lotus japonicus HOM05D000092 ORTHO05D000042 3.1e-12 76.3 178 30.3
Ca_27780_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 4.0e-12 75.9 102 61.8
Psat5g149920 Pisum sativum HOM05D000092 ORTHO05D005910 4.0e-12 75.9 116 40.5
Ca_06450_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 5.3e-12 75.5 179 33.0
LjContig00141g0025728 Lotus japonicus HOM05D000092 ORTHO05D011874 5.3e-12 75.5 165 29.1
Medtr1g031830 Medicago truncatula HOM05D000092 ORTHO05D000042 6.9e-12 75.1 107 41.1
Glyma.11G171355 Glycine max HOM05D000092 ORTHO05D011874 9.0e-12 74.7 162 33.3
Phvul.003G002300 Phaseolus vulgaris HOM05D000092 ORTHO05D011874 1.2e-11 74.3 188 30.9
Thecc.05G155400 Theobroma cacao HOM05D000092 ORTHO05D005910 1.2e-11 74.3 174 28.2
Medtr3g466590 Medicago truncatula HOM05D008660 ORTHO05D013095 1.5e-11 73.9 100 47.0
Ca_15038_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.0e-11 73.6 162 44.4
Medtr5g085400 Medicago truncatula HOM05D000092 ORTHO05D000042 2.0e-11 73.6 89 42.7
Thecc.10G127200 Theobroma cacao HOM05D000092 ORTHO05D000042 4.5e-11 72.4 158 29.7
arahy.Tifrunner.gnm1.ann1.79SUWC Arachis hypogaea HOM05D000092 ORTHO05D011874 5.8e-11 72.0 176 34.1
Medtr0043s0080 Medicago truncatula HOM05D008660 ORTHO05D005910 5.8e-11 72.0 103 43.7
COL.COLO4_03459 Corchorus olitorius HOM05D000092 ORTHO05D000042 1.3e-10 70.9 160 30.0
VMungo0647G0218 Vigna mungo HOM05D000092 ORTHO05D005910 1.7e-10 70.5 83 44.6
Lalb_Chr04g0258821 Lupinus albus HOM05D000092 ORTHO05D000042 2.2e-10 70.1 115 35.7
Phvul.003G002600 Phaseolus vulgaris HOM05D000092 ORTHO05D011874 2.2e-10 70.1 148 34.5
Duzib170G0561 Durio zibethinus HOM05D000092 ORTHO05D005910 2.9e-10 69.7 177 29.4
Duzib170G0681 Durio zibethinus HOM05D000092 ORTHO05D005910 3.8e-10 69.3 180 27.8
Phvul.010G023100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 3.8e-10 69.3 146 34.9
Phvul.008G246800 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 8.4e-10 68.2 153 30.1
COL.COLO4_28261 Corchorus olitorius HOM05D000092 ORTHO05D000042 1.1e-09 67.8 170 25.9
Psat2g013640 Pisum sativum HOM05D000092 ORTHO05D000042 1.1e-09 67.8 170 27.1
QL08p010843 Quercus lobata HOM05D000092 ORTHO05D000042 1.9e-09 67.0 190 26.3
QL10p036305 Quercus lobata HOM05D000092 ORTHO05D000042 1.9e-09 67.0 190 25.8
arahy.Tifrunner.gnm1.ann1.C8PGGG Arachis hypogaea HOM05D000092 ORTHO05D000042 2.4e-09 66.6 165 37.6
QL08p010984 Quercus lobata HOM05D000092 ORTHO05D000042 3.2e-09 66.2 153 28.8
TPR.G39686 Trifolium pratense HOM05D008660 ORTHO05D013095 3.2e-09 66.2 127 36.2
VMungo0331G0794 Vigna mungo HOM05D000092 ORTHO05D000042 3.2e-09 66.2 168 31.0
arahy.Tifrunner.gnm1.ann1.332RDU Arachis hypogaea HOM05D000092 ORTHO05D000042 9.3e-09 64.7 163 36.2
Phvul.011G172100 Phaseolus vulgaris HOM05D000092 ORTHO05D011874 9.3e-09 64.7 148 44.6
Phvul.010G025100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.2e-08 64.3 162 31.5
COL.COLO4_09569 Corchorus olitorius HOM05D000092 ORTHO05D000042 2.1e-08 63.5 147 29.9
COL.COLO4_34807 Corchorus olitorius HOM05D000092 ORTHO05D000042 2.1e-08 63.5 167 28.7
Phvul.010G023200 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 2.1e-08 63.5 160 33.1
QL08p010617 Quercus lobata HOM05D000092 ORTHO05D005910 2.1e-08 63.5 217 23.5
Duzib029G0001 Durio zibethinus HOM05D000092 ORTHO05D005910 2.7e-08 63.2 177 28.2
Gorai.009G374000 Gossypium raimondii HOM05D000092 ORTHO05D005910 3.5e-08 62.8 147 29.3
Thecc.05G155000 Theobroma cacao HOM05D000092 ORTHO05D005910 3.5e-08 62.8 174 26.4
Lalb_Chr04g0248501 Lupinus albus HOM05D000092 ORTHO05D000042 4.6e-08 62.4 155 29.0
arahy.Tifrunner.gnm1.ann1.NLQ59B Arachis hypogaea HOM05D008660 ORTHO05D005910 6.0e-08 62.0 70 50.0
arahy.Tifrunner.gnm1.ann1.CULB88 Arachis hypogaea HOM05D008660 ORTHO05D005910 7.9e-08 61.6 132 33.3
Duzib029G0002 Durio zibethinus HOM05D000092 ORTHO05D005910 1.3e-07 60.8 182 26.9
Duzib093G0709 Durio zibethinus HOM05D000092 ORTHO05D000042 1.3e-07 60.8 158 24.7
Phvul.008G246500 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.3e-07 60.8 149 30.2
LjContig00081g0019700 Lotus japonicus HOM05D000092 ORTHO05D000042 1.8e-07 60.5 145 30.3
Atru.chr2.2693 Acer truncatum HOM05D000092 ORTHO05D000042 2.3e-07 60.1 89 36.0
Potri.001G429890 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.3e-07 60.1 152 30.3
MBI11_g12656_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.0e-07 59.7 103 35.9
Thecc.07G040800 Theobroma cacao HOM05D000092 ORTHO05D000042 3.0e-07 59.7 152 29.6
Thecc.10G127900 Theobroma cacao HOM05D000092 ORTHO05D000042 3.0e-07 59.7 95 33.7
Phvul.003G002700 Phaseolus vulgaris HOM05D000092 ORTHO05D011874 3.9e-07 59.3 62 50.0
Potri.001G429430 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.9e-07 59.3 152 30.3
VMungo0251G2747 Vigna mungo HOM05D000092 ORTHO05D011874 3.9e-07 59.3 128 46.1
Glyma.14G204600 Glycine max HOM05D000092 ORTHO05D000042 5.1e-07 58.9 147 29.9
Gorai.009G373100 Gossypium raimondii HOM05D000092 ORTHO05D000042 6.7e-07 58.5 137 29.9
Gorai.009G373500 Gossypium raimondii HOM05D000092 ORTHO05D005910 6.7e-07 58.5 140 29.3
Gorai.009G373800 Gossypium raimondii HOM05D000092 ORTHO05D000042 6.7e-07 58.5 140 29.3
Phvul.008G245100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 6.7e-07 58.5 73 42.5
Gohir.D05G345951 Gossypium hirsutum HOM05D000092 ORTHO05D000042 8.7e-07 58.2 140 29.3
Thecc.07G041600 Theobroma cacao HOM05D000092 ORTHO05D005910 8.7e-07 58.2 139 29.5
Gohir.A01G047552 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.1e-06 57.8 142 28.2
Gorai.002G046700 Gossypium raimondii HOM05D000092 ORTHO05D014234 1.1e-06 57.8 163 27.0
Medtr2g023000 Medicago truncatula HOM05D000092 ORTHO05D005910 1.1e-06 57.8 105 39.0
Duzib169G0001 Durio zibethinus HOM05D000092 ORTHO05D005910 1.9e-06 57.0 155 29.0
Cc00_g08240 Coffea canephora HOM05D000092 ORTHO05D000042 3.3e-06 56.2 79 36.7
Cc00_g13170 Coffea canephora HOM05D000092 ORTHO05D000042 3.3e-06 56.2 79 36.7
Cc06_g19650 Coffea canephora HOM05D000092 ORTHO05D000042 3.3e-06 56.2 79 36.7
Gohir.D01G038228 Gossypium hirsutum HOM05D000092 ORTHO05D000042 4.3e-06 55.8 151 27.2
Gohir.D01G038256 Gossypium hirsutum HOM05D000092 ORTHO05D014234 4.3e-06 55.8 164 26.8
Medtr3g053200 Medicago truncatula HOM05D000092 ORTHO05D000042 4.3e-06 55.8 161 27.3
Phvul.008G244900 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.3e-06 55.8 151 29.1
VMungo1215G2963 Vigna mungo HOM05D000092 ORTHO05D011874 4.3e-06 55.8 143 42.0
VMungo0331G0289 Vigna mungo HOM05D000092 ORTHO05D000042 5.6e-06 55.5 171 28.1
Gorai.002G208100 Gossypium raimondii HOM05D000092 ORTHO05D014234 7.4e-06 55.1 165 27.3
Gorai.009G373900 Gossypium raimondii HOM05D000092 ORTHO05D000042 7.4e-06 55.1 165 36.4
Dinv18646 Davidia involucrata HOM05D000092 ORTHO05D000042 9.6e-06 54.7 86 37.2
Dinv26261 Davidia involucrata HOM05D000092 ORTHO05D000042 9.6e-06 54.7 86 37.2
Gohir.D05G346300 Gossypium hirsutum HOM05D000092 ORTHO05D000042 9.6e-06 54.7 137 29.2
Gohir.D05G346400 Gossypium hirsutum HOM05D000092 ORTHO05D000042 9.6e-06 54.7 140 30.0
Medtr3g055210 Medicago truncatula HOM05D000092 ORTHO05D000042 9.6e-06 54.7 180 26.7
Potri.001G426200 Populus trichocarpa HOM05D000092 ORTHO05D000042 9.6e-06 54.7 167 25.7


User provided reference genes

Program Settings