Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 9.8e-192 673.3 346 100.0
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.9e-155 552.7 297 97.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.3e-155 552.0 297 96.0
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 9.0e-153 543.9 297 95.3
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 7.1e-150 534.3 307 87.9
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.2e-149 533.5 297 91.2
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.1e-149 532.7 307 87.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.1e-149 532.7 297 92.3
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.7e-149 532.3 307 87.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.3e-148 530.0 307 89.6
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.3e-147 525.0 307 86.6
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.3e-147 525.0 297 89.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 9.6e-147 523.9 297 89.2
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.1e-146 522.7 307 87.0
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 6.2e-146 521.2 306 85.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.4e-145 519.2 307 86.6
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.1e-145 518.8 307 87.0
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 3.1e-145 518.8 307 86.6
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.9e-145 517.7 307 87.0
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 6.9e-145 517.7 307 87.0
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 6.9e-145 517.7 307 85.7
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 9.0e-145 517.3 307 86.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 9.0e-145 517.3 307 85.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.5e-144 516.5 307 86.0
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 2.0e-144 516.2 307 86.6
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 2.0e-144 516.2 307 85.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 2.6e-144 515.8 307 85.3
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 3.4e-144 515.4 307 85.0
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 4.5e-144 515.0 307 85.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.3e-143 513.5 307 85.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.7e-143 513.1 307 85.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.7e-143 513.1 307 85.7
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.2e-143 512.7 307 85.0
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.2e-143 512.7 307 85.0
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 2.9e-143 512.3 307 85.0
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.8e-143 511.9 307 84.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 4.9e-143 511.5 307 85.3
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 8.4e-143 510.8 307 84.7
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 8.4e-143 510.8 307 85.0
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.1e-142 510.4 307 85.7
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.1e-142 510.4 307 85.0
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.4e-142 510.0 307 85.7
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.4e-142 510.0 307 84.4
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.9e-142 509.6 307 85.0
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.9e-142 509.6 307 84.7
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.9e-142 509.6 307 85.3
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 2.5e-142 509.2 312 84.0
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.5e-142 509.2 297 87.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.2e-142 508.8 307 85.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 3.2e-142 508.8 307 85.0
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 4.2e-142 508.4 307 85.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 4.2e-142 508.4 307 84.4
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 5.5e-142 508.1 307 85.0
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 5.5e-142 508.1 312 83.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 5.5e-142 508.1 312 83.7
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 5.5e-142 508.1 297 87.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 7.1e-142 507.7 297 85.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 7.1e-142 507.7 307 84.4
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 7.1e-142 507.7 307 84.7
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.6e-141 506.5 297 86.9
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.1e-141 506.1 307 83.7
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.7e-141 505.8 307 84.4
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.7e-141 505.8 307 85.0
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.7e-141 505.8 308 85.4
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.7e-141 505.8 308 85.4
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.7e-141 505.8 297 85.9
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.7e-141 505.8 307 85.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-141 505.4 308 85.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 3.5e-141 505.4 307 84.7
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.5e-141 505.4 308 85.1
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 3.5e-141 505.4 307 84.4
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 6.0e-141 504.6 307 85.0
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 7.9e-141 504.2 297 85.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-140 503.8 312 82.7
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.0e-140 503.8 307 84.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.0e-140 503.8 307 83.4
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.3e-140 503.4 317 81.7
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.8e-140 503.1 307 84.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.8e-140 503.1 307 83.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.3e-140 502.7 316 83.2
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.3e-140 502.7 307 83.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 3.0e-140 502.3 307 83.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.9e-139 499.6 317 81.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-139 499.2 297 86.5
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-139 499.2 312 81.7
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 4.3e-139 498.4 297 86.2
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 4.3e-139 498.4 324 79.3
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.4e-139 497.7 330 79.1
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-138 496.9 330 78.8
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-138 496.9 330 78.8
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.3e-138 496.9 312 82.7
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.6e-138 496.5 330 78.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.6e-138 496.5 330 78.8
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.8e-138 495.0 307 82.7
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.8e-138 495.0 307 82.1
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 4.8e-138 495.0 307 82.1
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 4.8e-138 495.0 297 85.5
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 8.2e-138 494.2 340 77.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.1e-137 493.8 307 81.8
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.4e-137 492.7 307 81.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.1e-137 492.3 297 85.2
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 5.3e-137 491.5 307 81.1
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 5.3e-137 491.5 307 82.1
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.2e-136 490.3 307 80.8
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 2.6e-136 489.2 307 82.4
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.6e-136 489.2 297 83.5
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 7.6e-136 487.6 324 77.2
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.5e-135 484.6 313 80.2
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.9e-131 473.0 278 86.7
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 4.3e-131 471.9 307 80.5
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 9.7e-131 470.7 307 79.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.8e-130 469.2 312 78.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.4e-126 456.8 307 75.6
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.2e-126 455.3 307 77.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.2e-126 455.3 298 78.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 7.2e-126 454.5 334 72.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-125 453.8 307 78.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 9.7e-123 444.1 298 75.2
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.4e-121 439.5 287 77.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.9e-118 429.9 272 82.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.2e-118 429.1 262 84.4
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 9.4e-118 427.6 299 72.9
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.6e-117 425.6 258 84.9
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.8e-114 416.0 246 87.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.8e-113 413.3 354 63.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.5e-112 408.7 313 71.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.0e-108 395.6 338 63.0
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 8.2e-106 387.9 283 68.9
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.5e-99 367.1 307 68.1
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 9.1e-97 357.8 320 58.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.0e-91 340.1 305 58.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.4e-91 339.0 257 69.6
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 9.2e-89 331.3 198 85.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.3e-79 300.1 198 79.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.3e-79 300.1 198 79.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 6.0e-72 275.4 166 83.1
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.6e-63 245.4 314 50.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.7e-61 239.2 287 45.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.1e-54 218.0 286 44.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.6e-53 214.2 154 74.7
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.5e-51 207.6 322 41.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.1e-47 192.6 178 61.2
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.5e-43 179.5 109 81.7
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 3.5e-40 169.9 198 55.6
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.0e-36 155.2 149 56.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.3e-34 151.4 213 45.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 2.8e-29 133.7 80 83.8
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 7.2e-17 92.4 61 72.1
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.4e-15 88.2 75 62.7
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.3e-15 87.4 67 65.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.7e-13 81.3 48 85.4
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.4e-12 78.2 64 65.6
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 5.3e-12 76.3 90 48.9
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 3.8e-10 70.1 42 71.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 2.3e-07 60.8 43 69.8


User provided reference genes

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