Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35578 Trifolium pratense HOM05D000513 ORTHO05D003825 5.0e-41 170.6 84 100.0
Psat7g092080 Pisum sativum HOM05D000513 ORTHO05D003825 6.8e-22 107.1 60 85.0
Medtr4g094595 Medicago truncatula HOM05D000513 ORTHO05D003825 4.4e-21 104.4 58 84.5
Glyma.05G127800 Glycine max HOM05D000513 ORTHO05D003825 4.6e-18 94.4 57 73.7
Glyma.08G082600 Glycine max HOM05D000513 ORTHO05D003825 1.3e-17 92.8 57 71.9
Phvul.002G196600 Phaseolus vulgaris HOM05D000513 ORTHO05D003825 2.3e-17 92.0 60 71.7
VMungo0251G0935 Vigna mungo HOM05D000513 ORTHO05D003825 2.3e-17 92.0 60 66.7
COL.COLO4_07500 Corchorus olitorius HOM05D000513 ORTHO05D003825 2.5e-16 88.6 56 73.2
CiPaw.09G128900 Carya illinoinensis HOM05D000513 ORTHO05D003825 5.6e-16 87.4 56 71.4
Gohir.A06G197700 Gossypium hirsutum HOM05D000513 ORTHO05D003825 9.5e-16 86.7 56 71.4
Gohir.D06G205100 Gossypium hirsutum HOM05D000513 ORTHO05D003825 9.5e-16 86.7 56 71.4
Gorai.010G239400 Gossypium raimondii HOM05D000513 ORTHO05D003825 9.5e-16 86.7 56 71.4
Hma1.2p1_0137F.1_g062340 Hydrangea macrophylla HOM05D000513 ORTHO05D003825 1.2e-15 86.3 58 70.7
Manes.15G118600 Manihot esculenta HOM05D000513 ORTHO05D003825 1.2e-15 86.3 56 69.6
Gohir.D10G039600 Gossypium hirsutum HOM05D000513 ORTHO05D003825 1.6e-15 85.9 55 70.9
Gorai.011G041700 Gossypium raimondii HOM05D000513 ORTHO05D003825 1.6e-15 85.9 55 70.9
arahy.Tifrunner.gnm1.ann1.MB9SFC Arachis hypogaea HOM05D000513 ORTHO05D003825 2.1e-15 85.5 55 70.9
Lj4g0009995 Lotus japonicus HOM05D000513 ORTHO05D003825 2.1e-15 85.5 60 65.0
RcHm_v2.0_Chr5g0013241 Rosa chinensis HOM05D000513 ORTHO05D003825 2.8e-15 85.1 58 69.0
Thecc.06G155000 Theobroma cacao HOM05D000513 ORTHO05D003825 2.8e-15 85.1 56 69.6
Duzib235G0488 Durio zibethinus HOM05D000513 ORTHO05D003825 3.6e-15 84.7 56 67.9
Gohir.A10G038700 Gossypium hirsutum HOM05D000513 ORTHO05D003825 3.6e-15 84.7 55 69.1
arahy.Tifrunner.gnm1.ann1.5JCE23 Arachis hypogaea HOM05D000513 ORTHO05D003825 4.7e-15 84.3 52 75.0
DCAR_027953 Daucus carota HOM05D000513 ORTHO05D003825 6.2e-15 84.0 60 68.3
PGSC0003DMG400008322 Solanum tuberosum HOM05D000513 ORTHO05D003825 8.1e-15 83.6 60 65.0
AUR62030255 Chenopodium quinoa HOM05D000513 ORTHO05D003825 1.1e-14 83.2 60 66.7
Dinv32283 Davidia involucrata HOM05D000513 ORTHO05D003825 1.1e-14 83.2 56 67.9
FvH4_3g06130 Fragaria vesca HOM05D000513 ORTHO05D003825 1.4e-14 82.8 58 67.2
FAN11G0900 Fragaria x ananassa HOM05D000513 ORTHO05D003825 1.4e-14 82.8 58 67.2
Lalb_Chr13g0291431 Lupinus albus HOM05D000513 ORTHO05D003825 1.4e-14 82.8 57 64.9
Prupe.4G076100 Prunus persica HOM05D000513 ORTHO05D003825 1.4e-14 82.8 58 65.5
Ah.14g086610 Amaranthus hybridus HOM05D000513 ORTHO05D003825 1.8e-14 82.4 58 69.0
FAN16G3189 Fragaria x ananassa HOM05D000513 ORTHO05D003825 1.8e-14 82.4 57 66.7
MBI07_g07819_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D003825 1.8e-14 82.4 58 69.0
EL10Ac8g19763 Beta vulgaris HOM05D000513 ORTHO05D003825 2.4e-14 82.0 60 66.7
FAN21G1465 Fragaria x ananassa HOM05D000513 ORTHO05D003825 3.1e-14 81.6 58 65.5
MD05G1289400 Malus domestica HOM05D000513 ORTHO05D003825 3.1e-14 81.6 58 63.8
Sopen02g020100 Solanum pennellii HOM05D000513 ORTHO05D003825 3.1e-14 81.6 60 65.0
CAN.G257.22 Capsicum annuum HOM05D000513 ORTHO05D003825 4.0e-14 81.3 60 61.7
FAN25G0451 Fragaria x ananassa HOM05D000513 ORTHO05D003825 5.2e-14 80.9 58 67.2
Nn3g20850 Nelumbo nucifera HOM05D000513 ORTHO05D003825 5.2e-14 80.9 58 65.5
TWI73G1282 Tripterygium wilfordii HOM05D000513 ORTHO05D003825 5.2e-14 80.9 56 66.1
Nitab4.5_0011941g0020 Nicotiana tabacum HOM05D000513 ORTHO05D003825 8.9e-14 80.1 60 61.7
Solyc02g071040.3 Solanum lycopersicum HOM05D000513 ORTHO05D003825 8.9e-14 80.1 60 63.3
Eucgr.D00323 Eucalyptus grandis HOM05D000513 ORTHO05D003825 1.5e-13 79.3 57 64.9
Lj1C1184T1 Lonicera japonica HOM05D000513 ORTHO05D003825 1.5e-13 79.3 58 60.3
QL05p059401 Quercus lobata HOM05D000513 ORTHO05D003825 1.5e-13 79.3 58 62.1
Nn4g26493 Nelumbo nucifera HOM05D000513 ORTHO05D003825 2.6e-13 78.6 56 64.3
MD10G1265500 Malus domestica HOM05D000513 ORTHO05D003825 3.4e-13 78.2 55 65.5
Sed0016815 Sechium edule HOM05D000513 ORTHO05D003825 3.4e-13 78.2 59 62.7
PGR031G3590 Punica granatum HOM05D000513 ORTHO05D003825 4.4e-13 77.8 58 62.1
ClCG01G024360 Citrullus lanatus HOM05D000513 ORTHO05D003825 5.8e-13 77.4 59 61.0
CsaV3_6G051510 Cucumis sativus L. HOM05D000513 ORTHO05D003825 5.8e-13 77.4 59 61.0
Potri.001G351800 Populus trichocarpa HOM05D000513 ORTHO05D003825 5.8e-13 77.4 55 63.6
GSVIVG01021404001 Vitis vinifera HOM05D000513 ORTHO05D003825 5.8e-13 77.4 55 63.6
Sabra16G0231300 Salix brachista HOM05D000513 ORTHO05D003825 9.9e-13 76.6 55 63.6
SGA_v2.0_scaffold333G49008 Striga asiatica HOM05D000513 ORTHO05D003825 9.9e-13 76.6 58 60.3
ATR0135G002 Amborella trichopoda HOM05D000513 ORTHO05D003825 1.3e-12 76.3 56 62.5
Cpa.g.sc17.97 Carica papaya HOM05D000513 ORTHO05D003825 1.3e-12 76.3 56 60.7
unitig_37.g12107 Utricularia gibba HOM05D000513 ORTHO05D003825 1.3e-12 76.3 56 62.5
Ciclev10014107m.g Citrus clementina HOM05D000513 ORTHO05D003825 1.7e-12 75.9 56 60.7
MELO3C007155.2 Cucumis melo HOM05D000513 ORTHO05D003825 1.7e-12 75.9 59 59.3
HanXRQChr04g0117251 Helianthus annuus HOM05D000513 ORTHO05D003825 2.2e-12 75.5 58 58.6
Haze_05537 Corylus avellana HOM05D000513 ORTHO05D003825 2.9e-12 75.1 48 68.8
vmacro03968 Vaccinium macrocarpon HOM05D000513 ORTHO05D003825 2.9e-12 75.1 56 62.5
Peaxi162Scf00291g00210 Petunia axillaris HOM05D000513 ORTHO05D003825 3.8e-12 74.7 58 56.9
Os05g0533600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D003825 4.9e-12 74.3 56 58.9
Lsat_1_v5_gn_7_34440 Lactuca sativa HOM05D000513 ORTHO05D003825 6.4e-12 73.9 55 60.0
THA.LOC104812845 Tarenaya hassleriana HOM05D000513 ORTHO05D003825 6.4e-12 73.9 56 60.7
Atru.chr10.1352 Acer truncatum HOM05D000513 ORTHO05D003825 1.1e-11 73.2 55 63.6
CSS0046806 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D003825 1.4e-11 72.8 62 56.5
Sed0004653 Sechium edule HOM05D000513 ORTHO05D003825 2.4e-11 72.0 59 57.6
ECA236G3134 Erigeron canadensis HOM05D000513 ORTHO05D003825 5.4e-11 70.9 58 55.2
Migut.M00940 Erythranthe guttata HOM05D000513 ORTHO05D003825 9.2e-11 70.1 58 55.2
Zm00001eb353810 Zea mays HOM05D000513 ORTHO05D003825 9.2e-11 70.1 51 62.7
CANSAT35G1298 Cannabis sativa HOM05D000513 ORTHO05D003825 1.6e-10 69.3 55 56.4
CDE02G2485 Ceratophyllum demersum HOM05D000513 ORTHO05D003825 1.6e-10 69.3 77 46.8
Sc05g0006470 Simmondsia chinensis HOM05D000513 ORTHO05D003825 2.1e-10 68.9 58 58.6
Cc09_g09040 Coffea canephora HOM05D000513 ORTHO05D003825 2.7e-10 68.6 60 58.3
BcaB02g08602 Brassica carinata HOM05D000513 ORTHO05D003825 4.6e-10 67.8 56 55.4
BcaB04g18467 Brassica carinata HOM05D000513 ORTHO05D003825 4.6e-10 67.8 56 55.4
PSO541G3505 Papaver somniferum HOM05D000513 ORTHO05D003825 4.6e-10 67.8 58 55.2
PSO675G5345 Papaver somniferum HOM05D000513 ORTHO05D003825 4.6e-10 67.8 58 55.2
TAR626G1071 Trochodendron aralioides HOM05D000513 ORTHO05D003825 6.0e-10 67.4 50 60.0
HPP92_023427 Vanilla planifolia HOM05D000513 ORTHO05D003825 6.0e-10 67.4 54 53.7
AL7G36170 Arabidopsis lyrata HOM05D000513 ORTHO05D003825 7.8e-10 67.0 55 58.2
AT4G18240 Arabidopsis thaliana HOM05D000513 ORTHO05D003825 7.8e-10 67.0 55 58.2
A08p13610 Brassica napus HOM05D000513 ORTHO05D003825 7.8e-10 67.0 56 55.4
BraA08t33347Z Brassica rapa HOM05D000513 ORTHO05D003825 7.8e-10 67.0 56 55.4
Aa31LG6G930 Aethionema arabicum HOM05D000513 ORTHO05D003825 1.3e-09 66.2 54 57.4
BcaC07g38128 Brassica carinata HOM05D000513 ORTHO05D003825 1.7e-09 65.9 56 53.6
BolC8t48555H Brassica oleracea HOM05D000513 ORTHO05D003825 1.7e-09 65.9 56 53.6
Thhalv10024297m.g Eutrema salsugineum HOM05D000513 ORTHO05D003825 1.7e-09 65.9 56 55.4
Sp7g15870 Schrenkiella parvula HOM05D000513 ORTHO05D003825 1.7e-09 65.9 56 55.4
CARHR224990 Cardamine hirsuta HOM05D000513 ORTHO05D003825 3.0e-09 65.1 56 53.6
Aqoxy1G01800 Aquilegia oxysepala HOM05D000513 ORTHO05D003825 5.1e-09 64.3 52 57.7
Carub.0007s2309 Capsella rubella HOM05D000513 ORTHO05D003825 1.1e-08 63.2 56 51.8
SEGI_05664 Sequoiadendron giganteum HOM05D000513 ORTHO05D003825 1.5e-08 62.8 55 52.7
Os01g0720600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D003825 3.3e-08 61.6 54 51.9
SMO117G0255 Selaginella moellendorffii HOM05D000513 ORTHO05D003825 1.6e-07 59.3 55 50.9
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 6.9e-06 53.9 55 43.6


User provided reference genes

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