Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 3.7e-115 418.3 224 100.0
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.6e-97 359.8 231 84.8
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 8.8e-93 344.0 229 83.0
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 2.0e-84 316.2 230 77.4
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 6.4e-83 311.2 231 76.6
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 1.6e-81 306.6 230 74.3
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 5.0e-80 301.6 230 73.0
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 5.0e-80 301.6 230 73.9
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.6e-73 280.0 242 67.8
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 1.0e-72 277.3 252 66.7
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 1.0e-72 277.3 201 71.1
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 7.3e-71 271.2 185 79.5
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 1.2e-70 270.4 197 72.1
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 4.7e-70 268.5 240 62.1
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 6.2e-70 268.1 201 69.7
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 5.2e-69 265.0 238 65.1
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 5.2e-69 265.0 195 73.3
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.6e-68 262.7 236 63.1
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.4e-68 261.9 236 62.7
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 4.4e-68 261.9 204 69.6
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 9.8e-68 260.8 236 62.3
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.7e-67 260.0 236 61.9
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 2.2e-67 259.6 204 69.1
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 4.9e-67 258.5 193 72.5
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.9e-67 258.5 236 61.9
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 4.9e-67 258.5 235 63.4
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 8.3e-67 257.7 229 64.6
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.4e-66 256.9 196 68.9
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 1.9e-66 256.5 195 69.7
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 3.2e-66 255.8 224 60.7
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 1.6e-65 253.4 229 62.4
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 2.1e-65 253.1 209 65.6
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 2.1e-65 253.1 235 63.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 2.7e-65 252.7 211 66.8
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 2.7e-65 252.7 209 65.6
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 3.5e-65 252.3 224 62.5
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 7.8e-65 251.1 197 67.0
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 6.6e-64 248.1 197 66.0
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 2.5e-63 246.1 197 66.0
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 5.6e-63 245.0 288 54.2
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 7.3e-63 244.6 195 66.7
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 9.5e-63 244.2 197 64.5
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.2e-62 243.8 177 73.4
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.2e-62 243.8 184 70.1
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.5e-60 236.9 195 66.2
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.5e-60 236.9 219 60.7
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 5.8e-60 235.0 195 66.2
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 5.8e-60 235.0 195 63.6
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 5.8e-60 235.0 219 60.3
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 1.3e-59 233.8 229 58.5
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 2.2e-59 233.0 198 64.6
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 4.9e-59 231.9 195 62.1
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 1.1e-58 230.7 197 66.5
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 1.1e-58 230.7 176 71.0
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 2.4e-58 229.6 197 60.4
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 3.2e-58 229.2 196 62.2
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 5.4e-58 228.4 197 60.4
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 1.6e-57 226.9 213 58.7
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 2.1e-57 226.5 194 63.9
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 7.8e-57 224.6 169 69.8
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 1.0e-56 224.2 169 69.2
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 3.0e-56 222.6 225 56.0
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 3.0e-56 222.6 225 56.0
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 3.0e-56 222.6 225 56.0
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 3.9e-56 222.2 226 57.1
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 6.6e-56 221.5 228 56.6
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 8.6e-56 221.1 197 61.4
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.1e-55 220.7 198 62.1
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 1.9e-55 219.9 201 58.7
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 3.3e-55 219.2 196 63.3
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 4.3e-55 218.8 243 54.3
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 9.6e-55 217.6 196 61.2
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 2.8e-54 216.1 196 59.7
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 6.2e-54 214.9 223 53.8
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 8.1e-54 214.5 198 58.1
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 8.1e-54 214.5 197 60.9
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.1e-53 214.2 212 56.1
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.4e-53 213.8 196 62.2
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 5.2e-53 211.8 196 59.2
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 8.9e-53 211.1 213 55.4
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 4.4e-52 208.8 170 65.3
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 8.4e-51 204.5 173 65.3
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 1.4e-50 203.8 199 57.3
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 3.2e-50 202.6 226 52.7
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 2.1e-49 199.9 162 67.9
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 2.1e-46 189.9 178 60.7
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 8.1e-46 188.0 166 62.0
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.1e-42 177.6 135 71.1
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 5.4e-42 175.3 194 48.5
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 7.1e-42 174.9 137 68.6
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 1.1e-39 167.5 197 49.7
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 1.9e-39 166.8 185 49.7
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 5.6e-39 165.2 233 47.6
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 5.3e-37 158.7 133 65.4
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 1.2e-36 157.5 174 48.9
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 4.3e-31 139.0 104 72.1
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.3e-30 137.5 104 69.2
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.3e-30 137.5 104 69.2
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 4.8e-30 135.6 357 35.3
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 2.3e-24 116.7 142 43.0
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 5.5e-18 95.5 181 35.4
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.2e-17 94.4 64 78.1
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 1.0e-11 74.7 126 44.4
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 1.0e-08 64.7 144 33.3
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.5e-07 60.8 106 40.6
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 8.2e-06 55.1 43 67.4


User provided reference genes

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