Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 0.0e+00 1198.0 629 100.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 2.0e-299 1031.9 608 89.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 4.4e-291 1004.2 635 84.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.3e-290 1002.7 634 83.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.4e-284 982.6 611 84.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 9.0e-260 900.2 608 78.0
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 4.2e-257 891.3 605 77.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 7.6e-243 844.0 614 72.8
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.0e-239 833.6 614 71.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 1.8e-236 822.8 620 72.9
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.3e-218 763.5 762 57.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.7e-186 656.8 808 50.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 8.9e-183 644.4 593 62.6
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 2.0e-179 633.3 612 58.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.9e-177 626.7 626 57.3
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 1.2e-176 624.0 601 57.9
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 5.2e-175 618.6 582 60.3
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 2.2e-173 613.2 589 57.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 3.7e-173 612.5 596 57.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-172 610.1 612 57.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.9e-172 610.1 598 58.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.4e-172 609.8 584 59.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.1e-171 606.7 595 57.3
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 3.5e-171 605.9 544 60.8
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 3.0e-170 602.8 607 56.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 6.6e-170 601.7 595 57.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.1e-169 600.9 595 57.0
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 2.5e-169 599.7 595 57.1
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.1e-168 596.7 623 56.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.3e-167 593.2 631 55.3
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 5.4e-164 582.0 589 55.7
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 5.6e-161 572.0 600 54.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 7.3e-161 571.6 593 54.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-160 570.1 611 53.7
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 2.8e-160 569.7 612 54.1
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 4.7e-160 568.9 622 55.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 1.8e-159 567.0 611 54.2
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 4.0e-159 565.8 655 51.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 4.0e-159 565.8 581 54.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.6e-158 563.1 614 53.1
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 4.4e-158 562.4 606 54.3
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 5.8e-158 562.0 596 54.7
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 7.6e-158 561.6 592 54.6
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 4.9e-157 558.9 615 51.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.9e-156 557.0 533 59.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 7.1e-156 555.1 615 51.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 3.5e-155 552.7 600 53.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 4.6e-155 552.4 596 53.9
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 6.0e-155 552.0 599 53.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 1.7e-154 550.4 596 53.4
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 4.3e-153 545.8 584 54.1
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.3e-152 544.3 619 51.5
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 1.3e-152 544.3 590 52.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 2.8e-152 543.1 596 52.0
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 6.9e-151 538.5 601 53.4
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 9.0e-151 538.1 588 53.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 5.8e-150 535.4 622 50.3
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.7e-149 533.9 585 52.8
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 2.2e-149 533.5 585 51.6
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 4.9e-149 532.3 585 52.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.1e-148 531.2 631 50.1
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 3.2e-148 529.6 609 51.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 2.7e-147 526.6 619 51.4
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 3.9e-146 522.7 623 50.9
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 4.3e-145 519.2 604 52.5
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.1e-143 514.6 583 52.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.6e-142 508.4 548 52.4
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 3.8e-141 506.1 630 48.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 4.2e-140 502.7 630 46.8
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 9.3e-140 501.5 402 71.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 1.0e-138 498.0 617 46.8
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 5.1e-138 495.7 608 48.2
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 6.7e-138 495.4 589 50.4
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 6.7e-138 495.4 589 50.4
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 8.2e-136 488.4 589 49.7
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 8.2e-136 488.4 551 51.7
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.1e-135 488.0 580 50.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.1e-135 486.5 623 48.6
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 5.8e-134 482.3 587 49.4
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.0e-133 481.5 609 49.1
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.2e-131 474.6 618 47.4
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 6.7e-130 468.8 582 50.7
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 2.5e-129 466.8 535 52.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 7.4e-129 465.3 600 46.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 9.0e-127 458.4 443 58.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 5.9e-126 455.7 591 46.9
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 3.9e-106 389.8 617 43.4
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.2e-100 369.8 597 42.2
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 3.3e-97 360.1 344 59.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.2e-79 298.9 472 40.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.3e-77 295.0 628 35.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.3e-72 278.5 347 48.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 3.7e-72 276.9 279 56.3
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.2e-71 273.9 620 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 7.5e-65 252.7 578 32.7
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.9e-64 250.8 486 38.7
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 7.3e-60 236.1 582 32.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.6e-59 233.8 232 56.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 4.9e-56 223.4 265 47.9
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-55 220.3 406 36.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.1e-55 219.5 355 40.0
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 4.3e-52 210.3 172 63.4
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.6e-46 191.8 229 47.6
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 7.8e-46 189.5 494 33.0
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.4e-39 168.7 88 96.6
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.8e-35 154.5 173 46.8
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 9.3e-31 139.4 136 53.7
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 4.6e-30 137.1 215 43.7
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.9e-28 131.7 405 29.4
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.9e-28 131.7 184 41.3
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 9.0e-26 122.9 174 42.5
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 6.0e-22 110.2 89 64.0
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.0e-21 107.8 151 41.7
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.9e-20 105.1 90 57.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 4.3e-20 104.0 184 41.3
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-19 102.1 108 57.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.4e-18 98.2 51 92.2
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.8e-16 90.9 100 46.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 3.5e-14 84.3 71 64.8
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 7.9e-14 83.2 93 45.2
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-13 82.4 118 40.7
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.7e-12 77.0 153 38.6
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 9.7e-12 76.3 153 38.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.3e-11 75.9 298 27.2
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.2e-11 75.1 73 47.9
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.2e-11 75.1 345 27.0
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 4.8e-11 73.9 96 45.8
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.1e-10 72.8 96 44.8
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.7e-09 66.6 133 36.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.7e-09 66.6 140 35.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 7.7e-09 66.6 518 23.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-08 65.5 131 32.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 2.9e-08 64.7 84 44.0
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.5e-08 63.2 134 33.6
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 9.4e-07 59.7 95 37.9
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.9e-06 56.6 56 48.2


User provided reference genes

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