Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 7.0e-125 450.7 233 100.0
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 8.3e-110 400.6 231 89.2
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.6e-105 386.3 226 86.7
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.2e-92 343.6 229 76.4
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.6e-87 325.9 231 72.7
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 3.4e-79 298.9 207 75.8
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.4e-77 293.5 223 65.9
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.2e-77 292.4 228 66.2
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 4.1e-77 292.0 226 62.8
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 7.8e-76 287.7 224 63.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.3e-75 287.0 227 67.8
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 3.9e-75 285.4 223 63.7
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.1e-74 283.9 224 63.8
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 5.6e-74 281.6 222 63.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 9.6e-74 280.8 224 61.6
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.2e-73 280.4 222 62.6
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 3.6e-73 278.9 222 62.2
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.1e-72 277.3 210 68.1
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 6.9e-72 274.6 224 64.7
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.2e-71 273.9 229 63.3
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.0e-71 273.1 214 67.8
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 2.6e-71 272.7 189 74.6
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 9.9e-71 270.8 202 68.8
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.7e-70 270.0 225 60.9
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 2.2e-70 269.6 221 62.0
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.9e-70 269.2 197 68.5
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 2.9e-70 269.2 226 61.1
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 5.4e-69 265.0 227 60.4
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 2.7e-68 262.7 198 66.2
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 4.6e-68 261.9 226 61.9
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 7.8e-68 261.2 229 58.5
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 5.1e-67 258.5 225 58.7
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 6.6e-67 258.1 221 58.8
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 1.1e-66 257.3 225 58.7
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 5.6e-66 255.0 223 59.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 7.3e-66 254.6 221 58.8
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.8e-65 252.7 221 59.3
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.8e-65 252.7 198 65.2
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 4.8e-65 251.9 224 58.0
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 4.8e-65 251.9 156 78.8
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 1.1e-64 250.8 223 58.7
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.1e-64 250.8 212 60.8
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 4.0e-64 248.8 223 57.0
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 3.4e-63 245.7 223 59.2
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 3.4e-63 245.7 233 53.6
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 7.6e-63 244.6 226 58.0
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 3.8e-62 242.3 238 51.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 3.8e-62 242.3 168 70.2
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 4.9e-62 241.9 226 58.0
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 6.4e-62 241.5 218 58.7
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.1e-61 240.7 225 59.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.1e-61 240.7 219 58.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.9e-61 240.0 223 58.3
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 9.3e-61 237.7 227 53.7
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.6e-60 236.9 225 58.2
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 2.1e-60 236.5 181 66.9
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.3e-57 227.3 198 61.6
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.8e-57 226.1 224 55.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 2.8e-57 226.1 229 53.7
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.2e-54 216.5 177 62.1
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.2e-54 216.5 177 62.1
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 1.4e-53 213.8 225 50.7
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 3.0e-51 206.1 207 48.3
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.1e-51 205.3 201 54.7
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.0e-46 191.0 202 51.5
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.3e-43 179.9 130 68.5
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 7.4e-42 174.9 115 73.0
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 3.7e-41 172.6 168 58.3
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.1e-40 169.1 163 50.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 4.5e-39 165.6 139 66.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.6e-39 164.9 121 66.1
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.6e-39 164.9 121 66.1
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.7e-38 163.7 156 55.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 8.5e-38 161.4 224 43.3
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 7.2e-37 158.3 224 42.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 7.4e-34 148.3 137 59.1
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.8e-33 146.4 227 43.6
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.8e-33 145.6 111 63.1
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.4e-31 139.4 135 54.8
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.5e-31 139.0 114 59.6
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 7.7e-31 138.3 139 51.8
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 8.5e-30 134.8 117 62.4
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.1e-29 134.4 116 56.0
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.9e-29 133.7 129 57.4
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 7.9e-28 128.3 110 61.8
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 7.9e-28 128.3 109 60.6
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 8.8e-27 124.8 131 51.9
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.5e-26 124.0 135 50.4
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.8e-25 119.0 114 58.8
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.1e-24 117.9 118 52.5
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 2.4e-24 116.7 225 31.1
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 9.1e-24 114.8 72 73.6
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.9e-23 112.1 100 56.0
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 8.5e-22 108.2 192 32.3
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 2.1e-20 103.6 75 66.7
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.7e-20 102.4 88 58.0
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 2.0e-18 97.1 76 63.2
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 3.7e-17 92.8 86 51.2
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.1e-16 89.7 101 43.6
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.1e-16 89.4 64 67.2
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.5e-15 86.3 90 43.3
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.7e-14 84.0 69 59.4
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 4.1e-08 62.8 82 36.6
MD17G1182100 Malus domestica HOM05D007520 ORTHO05D009417 2.9e-06 56.6 49 57.1


User provided reference genes

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