Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35524 Trifolium pratense HOM05D008718 ORTHO05D010957 5.6e-80 300.8 147 100.0
TPR.G17895 Trifolium pratense HOM05D000003 ORTHO05D000022 7.9e-58 227.3 125 89.6
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 5.1e-57 224.6 125 88.8
TPR.G36503 Trifolium pratense HOM05D008718 ORTHO05D010957 2.8e-55 218.8 124 87.1
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 2.6e-37 159.1 125 59.2
TPR.G4558 Trifolium pratense HOM05D000101 ORTHO05D000089 8.5e-28 127.5 89 65.2
TPR.G34821 Trifolium pratense HOM05D008718 ORTHO05D010957 8.3e-23 110.9 103 51.5
TPR.G10331 Trifolium pratense HOM05D008718 ORTHO05D000022 4.5e-21 105.1 125 46.4
TPR.G544 Trifolium pratense HOM05D008718 ORTHO05D010957 3.8e-20 102.1 88 53.4
TPR.G30189 Trifolium pratense HOM05D008718 ORTHO05D010957 4.7e-18 95.1 100 48.0
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 6.1e-18 94.7 117 36.8
Lalb_Chr09g0330401 Lupinus albus HOM05D000155 ORTHO05D000022 8.0e-18 94.4 113 36.3
Lj1g0018212 Lotus japonicus HOM05D000003 ORTHO05D000022 1.4e-17 93.6 121 37.2
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 2.0e-16 89.7 121 37.2
Sabra09G0061300 Salix brachista HOM05D000003 ORTHO05D000022 2.6e-16 89.4 121 34.7
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 3.4e-16 89.0 121 34.7
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 1.7e-15 86.7 119 35.3
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 1.7e-15 86.7 119 35.3
TPR.G2407 Trifolium pratense HOM05D008718 ORTHO05D010957 2.2e-15 86.3 117 41.0
TPR.G8765 Trifolium pratense HOM05D008718 ORTHO05D010957 4.9e-15 85.1 92 45.7
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 1.1e-14 84.0 67 55.2
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 3.1e-14 82.4 121 33.9
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 3.5e-13 79.0 120 34.2
TPR.G2830 Trifolium pratense HOM05D008718 ORTHO05D010957 3.5e-13 79.0 68 50.0
Lalb_Chr05g0214691 Lupinus albus HOM05D008718 ORTHO05D010957 1.3e-12 77.0 92 35.9
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 1.7e-12 76.6 122 36.1
Ca_11781_v3 Cicer arietinum L. HOM05D000155 ORTHO05D000022 2.9e-12 75.9 118 32.2
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 2.9e-12 75.9 115 33.0
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.9e-12 75.9 123 39.0
Lalb_Chr14g0364311 Lupinus albus HOM05D008718 ORTHO05D010957 3.8e-12 75.5 92 35.9
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 5.0e-12 75.1 122 36.1
TPR.G31674 Trifolium pratense HOM05D008718 ORTHO05D016344 1.1e-11 73.9 85 45.9
TPR.G32733 Trifolium pratense HOM05D000005 ORTHO05D000012 2.5e-11 72.8 122 34.4
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 4.3e-11 72.0 119 32.8
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.3e-11 71.2 121 33.1
TPR.G33526 Trifolium pratense HOM05D000155 ORTHO05D000022 7.3e-11 71.2 117 33.3
TPR.G38775 Trifolium pratense HOM05D008718 ORTHO05D016344 2.1e-10 69.7 41 85.4
Ca_11916_v3 Cicer arietinum L. HOM05D000003 ORTHO05D000022 3.6e-10 68.9 135 31.1
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 6.1e-10 68.2 119 31.9
arahy.Tifrunner.gnm1.ann1.XW6Y6R Arachis hypogaea HOM05D000003 ORTHO05D000022 2.3e-09 66.2 108 36.1
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.1e-09 65.9 119 35.3
COL.COLO4_22677 Corchorus olitorius HOM05D000003 ORTHO05D000022 4.0e-09 65.5 112 33.9
SGA_v2.0_scaffold104G30181 Striga asiatica HOM05D000003 ORTHO05D000022 4.0e-09 65.5 116 31.9
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 8.9e-09 64.3 115 36.5
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-08 63.9 109 28.4
COL.COLO4_36152 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.2e-08 63.9 111 32.4
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.5e-08 63.5 115 36.5
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-08 62.8 104 32.7
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 4.4e-08 62.0 109 33.0
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-08 61.6 105 32.4
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 9.8e-08 60.8 111 31.5
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.8e-08 60.8 115 32.2
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.8e-08 60.8 115 32.2
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-07 60.5 106 29.2
COL.COLO4_30280 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.3e-07 60.5 121 32.2
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-07 59.3 115 32.2
Ca_27941_v3 Cicer arietinum L. HOM05D000085 ORTHO05D013008 2.9e-07 59.3 79 38.0
COL.COLO4_20072 Corchorus olitorius HOM05D003999 ORTHO05D010957 2.9e-07 59.3 79 34.2
Medtr1g056190 Medicago truncatula HOM05D008718 ORTHO05D010957 2.9e-07 59.3 72 41.7
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.7e-07 58.9 67 40.3
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-07 58.5 107 31.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-07 58.5 130 27.7
CSS0049818 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.9e-07 58.5 115 32.2
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 4.9e-07 58.5 123 29.3
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 6.4e-07 58.2 105 30.5
CSS0016748 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 6.4e-07 58.2 115 33.9
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 6.4e-07 58.2 120 26.7
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 8.3e-07 57.8 106 30.2
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 8.3e-07 57.8 95 33.7
COL.COLO4_15712 Corchorus olitorius HOM05D066797 ORTHO05D029099 8.3e-07 57.8 110 29.1
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-06 57.4 105 32.4
MBI19_g41377_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-06 57.0 101 37.6
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-06 57.0 121 30.6
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-06 56.6 106 28.3
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-06 56.6 119 27.7
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 1.9e-06 56.6 115 33.9
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-06 56.2 115 31.3
Atru.chr5.2141 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-06 55.8 97 30.9
EL10Ac5g11712 Beta vulgaris HOM05D000003 ORTHO05D000022 3.2e-06 55.8 111 32.4
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 3.2e-06 55.8 113 30.1
MBI01_g39980_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.2e-06 55.8 116 35.3
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 3.2e-06 55.8 95 32.6
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 3.2e-06 55.8 116 31.9
Lj3g0007232 Lotus japonicus HOM05D000003 ORTHO05D000126 4.1e-06 55.5 90 32.2
MBI11_g05090_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.1e-06 55.5 126 31.0
Atru.chr3.2572 Acer truncatum HOM05D000155 ORTHO05D000022 5.4e-06 55.1 119 30.3
COL.COLO4_01560 Corchorus olitorius HOM05D022577 ORTHO05D010957 5.4e-06 55.1 100 30.0
COL.COLO4_02464 Corchorus olitorius HOM05D022577 ORTHO05D010957 5.4e-06 55.1 100 30.0
COL.COLO4_03155 Corchorus olitorius HOM05D022577 ORTHO05D010957 5.4e-06 55.1 100 30.0
COL.COLO4_03198 Corchorus olitorius HOM05D022577 ORTHO05D010957 5.4e-06 55.1 100 30.0
MBI01_g33694_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.4e-06 55.1 121 34.7
Nitab4.5_0007388g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000022 5.4e-06 55.1 124 30.6
Actinidia10270 Actinidia chinensis HOM05D000650 ORTHO05D010020 7.0e-06 54.7 120 32.5
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 7.0e-06 54.7 121 30.6
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 7.0e-06 54.7 97 35.1
MBI18_g13989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.0e-06 54.7 130 27.7
MBI18_g33705_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.0e-06 54.7 123 35.0
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 9.2e-06 54.3 112 28.6
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 9.2e-06 54.3 116 30.2
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 9.2e-06 54.3 100 32.0
Lj2C63T5 Lonicera japonica HOM05D016027 ORTHO05D000022 9.2e-06 54.3 84 33.3
MBI17_g12074_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.2e-06 54.3 117 30.8


User provided reference genes

Program Settings