Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35503 Trifolium pratense HOM05D007178 ORTHO05D009022 1.6e-55 219.2 112 100.0
Psat1g049440 Pisum sativum HOM05D007178 ORTHO05D009022 1.0e-36 156.8 91 86.8
Glyma.07G128900 Glycine max HOM05D007178 ORTHO05D009022 9.4e-35 150.2 84 89.3
Phvul.004G171100 Phaseolus vulgaris HOM05D007178 ORTHO05D009022 2.1e-34 149.1 84 90.5
Lj2g0013550 Lotus japonicus HOM05D007178 ORTHO05D009022 1.5e-32 142.9 96 77.1
Glyma.01G003100 Glycine max HOM05D007178 ORTHO05D009022 2.2e-31 139.0 84 84.5
Lalb_Chr22g0349731 Lupinus albus HOM05D007178 ORTHO05D009022 2.5e-27 125.6 92 73.9
Duzib235G1408 Durio zibethinus HOM05D007178 ORTHO05D009022 1.4e-25 119.8 90 67.8
Cfa000915 Carpinus fangiana HOM05D007178 ORTHO05D009022 8.8e-25 117.1 70 80.0
Gohir.D06G204000 Gossypium hirsutum HOM05D007178 ORTHO05D009022 2.0e-24 115.9 77 75.3
CiPaw.09G121000 Carya illinoinensis HOM05D007178 ORTHO05D009022 3.3e-24 115.2 71 78.9
Lalb_Chr14g0375331 Lupinus albus HOM05D007178 ORTHO05D009022 3.3e-24 115.2 74 77.0
Gohir.A06G196500 Gossypium hirsutum HOM05D007178 ORTHO05D009022 4.4e-24 114.8 84 71.4
CiPaw.10G089700 Carya illinoinensis HOM05D007178 ORTHO05D009022 9.7e-24 113.6 100 61.0
Gorai.010G238000 Gossypium raimondii HOM05D007178 ORTHO05D009022 9.7e-24 113.6 96 65.6
Nn3g20425 Nelumbo nucifera HOM05D007178 ORTHO05D009022 9.7e-24 113.6 77 76.6
Duzib160G0207 Durio zibethinus HOM05D007178 ORTHO05D009022 1.3e-23 113.2 79 68.4
TWI73G0655 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 1.7e-23 112.8 87 65.5
Sed0021444 Sechium edule HOM05D007178 ORTHO05D009022 2.2e-23 112.5 91 61.5
TWI09G0402 Tripterygium wilfordii HOM05D007178 ORTHO05D009022 2.2e-23 112.5 83 69.9
GSVIVG01021533001 Vitis vinifera HOM05D007178 ORTHO05D009022 2.8e-23 112.1 74 73.0
Ciclev10017932m.g Citrus clementina HOM05D007178 ORTHO05D009022 3.7e-23 111.7 84 67.9
PGR083G2020 Punica granatum HOM05D007178 ORTHO05D009022 4.8e-23 111.3 74 71.6
Thecc.06G146700 Theobroma cacao HOM05D007178 ORTHO05D009022 4.8e-23 111.3 71 74.6
CANSAT35G0370 Cannabis sativa HOM05D007178 ORTHO05D009022 6.3e-23 110.9 71 76.1
QL05p055487 Quercus lobata HOM05D007178 ORTHO05D009022 1.1e-22 110.2 69 76.8
Manes.17G073200 Manihot esculenta HOM05D007178 ORTHO05D009022 1.4e-22 109.8 70 74.3
Atru.chr10.1132 Acer truncatum HOM05D007178 ORTHO05D009022 1.8e-22 109.4 70 74.3
Dinv21533 Davidia involucrata HOM05D007178 ORTHO05D009022 2.4e-22 109.0 70 74.3
ClCG01G024800 Citrullus lanatus HOM05D007178 ORTHO05D009022 5.3e-22 107.8 109 55.0
MD05G1280800 Malus domestica HOM05D007178 ORTHO05D009022 5.3e-22 107.8 67 77.6
THA.LOC104798400 Tarenaya hassleriana HOM05D007178 ORTHO05D009022 7.0e-22 107.5 80 68.8
VMungo0464G0906 Vigna mungo HOM05D007178 ORTHO05D009022 7.0e-22 107.5 57 89.5
MD10G1259200 Malus domestica HOM05D007178 ORTHO05D009022 9.1e-22 107.1 66 77.3
Prupe.4G084100 Prunus persica HOM05D007178 ORTHO05D009022 9.1e-22 107.1 70 75.7
TAR460G0007 Trochodendron aralioides HOM05D007178 ORTHO05D009022 1.2e-21 106.7 79 70.9
Gorai.011G046500 Gossypium raimondii HOM05D007178 ORTHO05D009022 1.6e-21 106.3 95 60.0
Migut.M00887 Erythranthe guttata HOM05D007178 ORTHO05D009022 2.0e-21 105.9 81 70.4
MELO3C007115.2 Cucumis melo HOM05D007178 ORTHO05D009022 2.6e-21 105.5 98 57.1
CsaV3_6G051920 Cucumis sativus L. HOM05D007178 ORTHO05D009022 2.6e-21 105.5 96 57.3
FvH4_3g05190 Fragaria vesca HOM05D007178 ORTHO05D009022 2.6e-21 105.5 78 66.7
FAN16G3072 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.6e-21 105.5 78 66.7
FAN21G4020 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.6e-21 105.5 78 66.7
unitig_26.g9766 Utricularia gibba HOM05D007178 ORTHO05D009022 3.5e-21 105.1 86 66.3
FAN25G1793 Fragaria x ananassa HOM05D007178 ORTHO05D009022 4.5e-21 104.8 78 66.7
RcHm_v2.0_Chr5g0014561 Rosa chinensis HOM05D007178 ORTHO05D009022 4.5e-21 104.8 78 67.9
Cc00_g05770 Coffea canephora HOM05D007178 ORTHO05D009022 5.9e-21 104.4 91 64.8
Gohir.A10G042700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.9e-21 104.4 88 63.6
Gohir.D10G043700 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.9e-21 104.4 88 63.6
vmacro03352 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 7.7e-21 104.0 70 74.3
MBI18_g11238_MAGBIO Magnolia biondii HOM05D007178 ORTHO05D009022 1.3e-20 103.2 71 70.4
CARHR225220 Cardamine hirsuta HOM05D007178 ORTHO05D009022 1.7e-20 102.8 90 62.2
DCAR_027898 Daucus carota HOM05D007178 ORTHO05D009022 2.9e-20 102.1 73 71.2
Potri.004G133260 Populus trichocarpa HOM05D007178 ORTHO05D009022 2.9e-20 102.1 88 61.4
COL.COLO4_31031 Corchorus olitorius HOM05D007178 ORTHO05D009022 5.0e-20 101.3 65 73.8
Dinv32223 Davidia involucrata HOM05D007178 ORTHO05D009022 5.0e-20 101.3 78 67.9
Cpa.g.sc17.33 Carica papaya HOM05D007178 ORTHO05D009022 6.5e-20 100.9 77 66.2
Solyc08g022120.3 Solanum lycopersicum HOM05D007178 ORTHO05D009022 6.5e-20 100.9 84 63.1
Sopen08g007660 Solanum pennellii HOM05D007178 ORTHO05D009022 6.5e-20 100.9 84 63.1
PSO541G3638 Papaver somniferum HOM05D007178 ORTHO05D009022 8.5e-20 100.5 73 68.5
PSO675G4358 Papaver somniferum HOM05D007178 ORTHO05D009022 8.5e-20 100.5 73 68.5
Sp7g15630 Schrenkiella parvula HOM05D007178 ORTHO05D009022 1.1e-19 100.1 93 58.1
Ah.14g086320 Amaranthus hybridus HOM05D007178 ORTHO05D009022 1.5e-19 99.8 88 58.0
Thhalv10026632m.g Eutrema salsugineum HOM05D007178 ORTHO05D009022 1.5e-19 99.8 80 66.2
Sc05g0006030 Simmondsia chinensis HOM05D007178 ORTHO05D009022 1.5e-19 99.8 90 60.0
CSS0006510 Camellia sinensis var. sinensis HOM05D007178 ORTHO05D009022 1.9e-19 99.4 70 71.4
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 4.2e-19 98.2 77 63.6
EL10Ac8g19636 Beta vulgaris HOM05D007178 ORTHO05D009022 7.2e-19 97.4 83 61.4
Lsat_1_v5_gn_4_29580 Lactuca sativa HOM05D007178 ORTHO05D009022 7.2e-19 97.4 73 68.5
Nitab4.5_0000315g0010 Nicotiana tabacum HOM05D007178 ORTHO05D009022 1.2e-18 96.7 76 67.1
Nitab4.5_0005655g0060 Nicotiana tabacum HOM05D007178 ORTHO05D009022 1.2e-18 96.7 80 63.8
ECA234G3634 Erigeron canadensis HOM05D007178 ORTHO05D009022 2.1e-18 95.9 81 65.4
Aqoxy4G00077 Aquilegia oxysepala HOM05D007178 ORTHO05D009022 2.7e-18 95.5 84 61.9
Hund17773 Selenicereus undatus HOM05D007178 ORTHO05D009022 2.7e-18 95.5 86 60.5
AT4G18400 Arabidopsis thaliana HOM05D007178 ORTHO05D009022 4.7e-18 94.7 93 57.0
Peaxi162Scf00045g02430 Petunia axillaris HOM05D007178 ORTHO05D009022 4.7e-18 94.7 73 63.0
HPP92_014792 Vanilla planifolia HOM05D007178 ORTHO05D009022 8.0e-18 94.0 72 62.5
BraA01t00981Z Brassica rapa HOM05D007178 ORTHO05D009022 1.0e-17 93.6 102 54.9
Carub.0007s2286 Capsella rubella HOM05D007178 ORTHO05D009022 1.4e-17 93.2 77 64.9
A01p10340 Brassica napus HOM05D007178 ORTHO05D009022 1.8e-17 92.8 102 54.9
BolC1t01205H Brassica oleracea HOM05D007178 ORTHO05D009022 1.8e-17 92.8 102 54.9
AL7G35950 Arabidopsis lyrata HOM05D007178 ORTHO05D009022 2.3e-17 92.4 104 53.8
arahy.Tifrunner.gnm1.ann1.KYL6KL Arachis hypogaea HOM05D007178 ORTHO05D009022 4.0e-17 91.7 70 70.0
A03p51260 Brassica napus HOM05D007178 ORTHO05D009022 4.0e-17 91.7 75 64.0
BraA03t14208Z Brassica rapa HOM05D007178 ORTHO05D009022 4.0e-17 91.7 75 64.0
BcaNung00005 Brassica carinata HOM05D007178 ORTHO05D009022 3.3e-16 88.6 107 52.3
BcaC09g51519 Brassica carinata HOM05D007178 ORTHO05D009022 5.7e-16 87.8 111 49.5
C01p12290 Brassica napus HOM05D007178 ORTHO05D009022 5.7e-16 87.8 111 49.5
FAN11G0307 Fragaria x ananassa HOM05D007178 ORTHO05D009022 7.5e-16 87.4 62 66.1
CDE11G0374 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 9.7e-16 87.0 69 58.0
BcaC06g30589 Brassica carinata HOM05D007178 ORTHO05D009022 2.2e-15 85.9 75 61.3
vmacro05543 Vaccinium macrocarpon HOM05D007178 ORTHO05D009022 2.8e-15 85.5 80 60.0
CDE05G0627 Ceratophyllum demersum HOM05D007178 ORTHO05D009022 6.3e-15 84.3 72 56.9
arahy.Tifrunner.gnm1.ann1.WWKL6Q Arachis hypogaea HOM05D007178 ORTHO05D009022 2.7e-13 79.0 42 85.7
SGA_v2.0_scaffold1G00199 Striga asiatica HOM05D007178 ORTHO05D009022 4.5e-13 78.2 47 76.6
Aa31LG6G1110 Aethionema arabicum HOM05D007178 ORTHO05D009022 5.9e-13 77.8 120 42.5
Os09g0569450 Oryza sativa ssp. japonica HOM05D007178 ORTHO05D009022 5.9e-13 77.8 94 47.9
Zm00001eb307790 Zea mays HOM05D007178 ORTHO05D009022 1.3e-12 76.6 68 57.4
Actinidia33661 Actinidia chinensis HOM05D007178 ORTHO05D009022 1.7e-12 76.3 73 58.9
HanXRQChr07g0199391 Helianthus annuus HOM05D007178 ORTHO05D009022 2.2e-12 75.9 43 81.4
Actinidia13672 Actinidia chinensis HOM05D007178 ORTHO05D009022 2.9e-12 75.5 43 81.4
FvH4_7g10051 Fragaria vesca HOM05D007178 ORTHO05D009022 2.9e-12 75.5 54 64.8
ATR1098G109 Amborella trichopoda HOM05D007178 ORTHO05D009022 7.2e-11 70.9 45 71.1
Ah.13g071740 Amaranthus hybridus HOM05D007178 ORTHO05D009022 2.3e-09 65.9 47 70.2
FvH4_6g47640 Fragaria vesca HOM05D007178 ORTHO05D009022 8.8e-09 63.9 42 66.7
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 8.8e-09 63.9 74 47.3
FAN14G2280 Fragaria x ananassa HOM05D007178 ORTHO05D009022 2.6e-08 62.4 42 64.3
FvH4_3g19851 Fragaria vesca HOM05D007178 ORTHO05D009022 4.4e-08 61.6 40 65.0
FAN12G1070 Fragaria x ananassa HOM05D007178 ORTHO05D009022 1.7e-07 59.7 41 65.9
Gohir.D07G160820 Gossypium hirsutum HOM05D007178 ORTHO05D009022 5.4e-06 54.7 32 75.0


User provided reference genes

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