Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.7e-147 526.2 306 100.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.7e-131 473.0 306 85.3
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 3.8e-131 471.9 306 84.0
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.7e-126 455.3 306 79.7
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 9.8e-119 430.6 306 80.4
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 4.9e-118 428.3 306 80.4
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.7e-116 422.5 306 82.7
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.7e-116 422.5 306 77.1
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 3.9e-115 418.7 306 74.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.5e-114 416.0 307 74.3
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 4.3e-114 415.2 306 73.2
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.1e-113 412.9 306 78.4
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 5.8e-111 404.8 306 80.4
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 4.1e-109 398.7 306 75.8
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 5.1e-107 391.7 306 69.3
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.2e-105 387.1 293 70.0
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 4.7e-105 385.2 295 72.2
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-103 379.4 295 69.5
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 4.9e-102 375.2 292 72.9
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 8.3e-102 374.4 305 71.8
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 3.2e-101 372.5 308 68.8
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.1e-101 372.1 292 69.2
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 7.1e-101 371.3 303 67.0
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.6e-100 370.2 301 72.8
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.6e-100 370.2 295 68.1
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.1e-100 369.8 302 72.5
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 3.5e-100 369.0 292 67.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 3.0e-99 365.9 306 66.3
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.1e-99 365.2 295 69.8
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.1e-98 364.0 306 67.6
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-98 363.6 295 67.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.9e-98 363.2 305 69.8
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.5e-98 362.8 295 66.8
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.2e-97 360.5 299 66.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.8e-97 359.4 299 63.9
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.8e-97 359.4 299 66.6
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.8e-97 359.4 299 65.9
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.8e-97 359.4 299 65.9
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.6e-97 359.0 305 65.2
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 4.7e-97 358.6 296 66.2
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 8.1e-97 357.8 295 69.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 8.1e-97 357.8 295 70.5
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 8.1e-97 357.8 295 70.5
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.1e-97 357.8 295 65.4
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 8.1e-97 357.8 295 65.4
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 8.1e-97 357.8 299 73.2
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.8e-96 356.7 300 65.0
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-96 356.7 299 65.9
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.1e-96 355.9 295 64.7
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.2e-95 354.0 306 69.0
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 2.6e-95 352.8 301 72.4
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.4e-95 352.1 306 69.0
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-94 350.5 299 67.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.7e-94 350.1 305 62.3
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 2.2e-94 349.7 299 61.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.8e-94 349.0 284 66.5
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.1e-93 347.4 306 63.1
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-93 347.4 314 70.1
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.4e-93 347.1 305 63.0
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.4e-93 345.1 295 67.5
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.2e-92 344.0 284 65.8
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.1e-92 343.2 289 62.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 4.6e-92 342.0 304 65.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 4.3e-90 335.5 300 60.3
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 9.6e-90 334.3 306 58.8
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 2.1e-89 333.2 290 62.1
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 8.1e-89 331.3 298 60.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 4.4e-87 325.5 298 61.1
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 8.4e-86 321.2 295 58.6
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 8.4e-86 321.2 306 56.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.9e-85 320.1 299 68.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.9e-85 320.1 302 62.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.2e-85 319.3 294 54.8
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 3.2e-85 319.3 296 62.2
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 9.3e-85 317.8 265 75.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.2e-84 317.4 305 63.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.7e-84 316.2 303 67.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 4.6e-84 315.5 305 61.0
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 6.0e-84 315.1 299 60.5
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 6.0e-84 315.1 289 60.6
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 1.3e-83 313.9 300 65.3
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.1e-83 312.0 300 59.7
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 8.7e-83 311.2 291 61.9
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 8.7e-83 311.2 351 55.0
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.5e-82 310.5 275 59.3
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.9e-82 310.1 298 65.8
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 5.6e-82 308.5 300 62.7
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.3e-81 307.4 252 66.3
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.1e-81 306.6 300 63.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 2.8e-81 306.2 206 73.3
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.6e-81 305.8 298 55.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.1e-81 304.7 296 59.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.1e-80 304.3 296 59.8
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.1e-80 302.8 299 60.2
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 9.0e-80 301.2 299 59.9
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 9.0e-80 301.2 207 74.9
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.2e-79 300.8 299 61.5
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.5e-79 300.4 299 54.8
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 2.0e-79 300.1 299 58.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.0e-79 300.1 296 57.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.6e-79 299.7 299 64.9
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 2.6e-79 299.7 299 59.9
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 4.5e-79 298.9 300 51.7
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 5.8e-79 298.5 306 53.9
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 7.6e-79 298.1 301 57.8
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 7.6e-79 298.1 301 57.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 7.6e-79 298.1 299 59.5
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 3.8e-78 295.8 291 57.7
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 8.4e-78 294.7 300 50.3
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 5.4e-77 292.0 295 52.2
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.5e-74 283.9 298 54.4
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.9e-74 283.5 283 54.4
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.6e-74 282.0 257 61.1
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 9.6e-74 281.2 283 56.9
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.0e-71 273.5 232 72.4
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.5e-71 272.3 214 67.3
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.2e-70 270.0 310 48.1
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.7e-68 263.1 305 52.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-66 257.3 186 71.0
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 2.5e-61 240.0 275 49.1
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 7.1e-61 238.4 308 53.6
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.5e-55 220.7 315 46.7
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.4e-53 214.2 291 46.0
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 4.2e-53 212.6 218 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.0e-50 203.8 168 58.9
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.0e-43 179.9 311 40.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 3.1e-40 169.9 100 83.0
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 7.7e-39 165.2 279 46.2
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 4.7e-36 156.0 253 38.7
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.8e-33 146.7 205 42.9
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-32 144.4 124 60.5
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.0e-27 126.7 137 59.9
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.0e-27 126.7 137 59.9
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 2.2e-25 120.6 187 38.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.4e-24 117.1 68 76.5
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 5.4e-24 115.9 206 32.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.2e-21 106.7 66 71.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.2e-20 104.8 169 34.9
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-17 92.4 130 55.4
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 6.3e-17 92.4 65 69.2
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.1e-16 89.7 62 71.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 3.5e-15 86.7 43 95.3
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.8e-14 83.2 52 75.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.2e-13 79.7 119 45.4
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.2e-13 79.7 50 76.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.4e-10 70.1 44 68.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.3e-09 68.2 39 76.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.3e-09 68.2 44 68.2
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.4e-08 63.9 98 51.0


User provided reference genes

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