Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 9.0e-40 166.4 80 100.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 6.1e-20 100.5 60 76.7
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.0e-19 99.8 60 76.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 1.4e-19 99.4 60 75.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 1.4e-19 99.4 60 75.0
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 1.4e-19 99.4 60 75.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-19 98.6 60 75.0
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 2.3e-19 98.6 60 76.7
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 5.1e-19 97.4 60 73.3
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 6.7e-19 97.1 60 73.3
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 8.8e-19 96.7 60 71.7
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 1.5e-18 95.9 62 71.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.0e-18 95.5 60 73.3
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-18 95.1 60 71.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-18 95.1 60 71.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 2.6e-18 95.1 60 71.7
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 2.6e-18 95.1 60 71.7
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 2.6e-18 95.1 60 71.7
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 3.3e-18 94.7 60 70.0
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 3.3e-18 94.7 60 71.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 4.4e-18 94.4 62 64.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 5.7e-18 94.0 64 65.6
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 71.7
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 5.7e-18 94.0 59 72.9
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 71.7
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 5.7e-18 94.0 60 70.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 7.4e-18 93.6 60 70.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 7.4e-18 93.6 60 70.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 7.4e-18 93.6 60 70.0
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 7.4e-18 93.6 60 68.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 7.4e-18 93.6 60 70.0
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 66.7
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 9.7e-18 93.2 60 70.0
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-17 92.8 60 66.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-17 92.8 60 66.7
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 1.3e-17 92.8 60 66.7
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 1.3e-17 92.8 60 66.7
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 1.3e-17 92.8 60 66.7
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 1.7e-17 92.4 60 70.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.7e-17 92.4 60 70.0
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-17 92.4 59 71.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 1.7e-17 92.4 60 70.0
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 1.7e-17 92.4 60 70.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 1.7e-17 92.4 60 70.0
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.2e-17 92.0 59 71.2
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.2e-17 92.0 60 68.3
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 68.3
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 66.7
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 70.0
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 68.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 66.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 2.8e-17 91.7 60 68.3
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 3.7e-17 91.3 60 66.7
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 3.7e-17 91.3 60 68.3
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 3.7e-17 91.3 60 66.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 3.7e-17 91.3 60 68.3
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 4.8e-17 90.9 60 68.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 66.7
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 66.7
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 65.0
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 6.3e-17 90.5 60 68.3
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 8.2e-17 90.1 60 66.7
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 8.2e-17 90.1 60 66.7
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 8.2e-17 90.1 60 65.0
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 8.2e-17 90.1 60 66.7
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 1.1e-16 89.7 60 68.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 1.1e-16 89.7 60 66.7
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 1.1e-16 89.7 60 66.7
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 1.4e-16 89.4 60 65.0
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 1.4e-16 89.4 60 66.7
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 1.4e-16 89.4 60 66.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 1.4e-16 89.4 60 68.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 1.4e-16 89.4 60 63.3
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 1.8e-16 89.0 60 65.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 1.8e-16 89.0 60 65.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 1.8e-16 89.0 60 66.7
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 1.8e-16 89.0 60 68.3
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 2.4e-16 88.6 60 63.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 3.1e-16 88.2 60 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 4.1e-16 87.8 60 63.3
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 4.1e-16 87.8 60 68.3
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 4.1e-16 87.8 60 66.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 5.3e-16 87.4 60 63.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 5.3e-16 87.4 60 66.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 7.0e-16 87.0 60 61.7
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 7.0e-16 87.0 60 63.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 9.1e-16 86.7 60 61.7
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 1.2e-15 86.3 60 60.0
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 1.2e-15 86.3 60 60.0
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 1.6e-15 85.9 60 63.3
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 2.0e-15 85.5 60 61.7
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 3.5e-15 84.7 63 63.5
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.7e-15 83.6 59 64.4
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 2.2e-14 82.0 63 61.9
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.5e-13 78.6 60 56.7
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 5.5e-13 77.4 60 56.7
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.2e-12 76.3 60 56.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 2.1e-12 75.5 60 56.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-11 72.8 58 55.2
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 1.4e-11 72.8 53 62.3
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.8e-08 62.4 60 51.7
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 3.1e-08 61.6 56 51.8
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 5.9e-07 57.4 34 70.6


User provided reference genes

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