Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1959.1 1010 100.0
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1879.0 1010 95.0
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1857.4 1010 94.0
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1855.1 1010 93.8
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1815.0 1008 91.4
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1801.6 1010 90.3
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1791.9 1010 89.7
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1790.8 1010 89.7
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1786.5 1008 90.0
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1750.3 1008 88.2
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1740.7 1010 87.4
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1718.4 1010 86.5
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1624.0 1012 80.4
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1616.7 1012 80.0
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1608.2 1010 80.3
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1600.9 1013 79.4
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1600.1 1011 80.3
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1593.2 1012 79.1
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1586.2 1011 78.7
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1580.5 1009 78.3
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1575.5 1012 77.8
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1573.9 1012 77.8
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1572.4 1011 78.6
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1572.0 1012 78.0
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1572.0 1012 78.4
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1569.3 1011 78.5
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1569.3 1015 77.8
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1567.4 1010 77.5
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1562.7 1010 77.8
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1548.9 1011 76.2
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1548.9 1041 75.0
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1545.8 1011 75.4
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1544.3 1011 76.0
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1540.0 1014 76.7
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1539.6 1011 76.3
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1539.2 1014 76.5
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1537.7 1008 76.2
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1534.6 1011 75.8
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1533.1 1011 75.5
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1533.1 1011 75.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1532.7 1011 75.2
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1009 76.2
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1530.4 1011 75.3
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1530.4 1011 75.3
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1528.8 1012 75.2
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1528.5 1012 75.1
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1520.4 1011 75.0
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1519.2 1012 74.8
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1517.7 1012 74.8
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1515.7 1017 75.1
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1506.9 1011 75.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1494.9 1015 74.8
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1494.2 1015 74.5
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1493.4 1013 75.2
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1492.6 1011 74.1
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1489.2 1009 73.7
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1486.5 1015 74.4
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1483.0 1009 73.3
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1482.6 1073 70.4
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1470.3 1009 73.2
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1469.9 1008 73.8
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1468.4 1080 69.6
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1468.0 1009 73.6
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1464.5 1012 74.5
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1463.7 1011 73.7
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1024 71.9
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 998 73.6
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1453.3 1009 72.5
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1453.0 1041 70.4
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1452.6 914 79.9
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1452.2 1015 71.4
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1451.4 1009 72.4
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1442.9 1010 72.1
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1440.6 1010 70.1
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 1008 70.8
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1434.9 914 78.3
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1433.7 1069 68.9
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1430.2 1027 72.6
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1427.5 1009 71.0
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1424.5 992 73.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1420.2 1146 65.0
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1407.5 1092 67.8
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1405.6 1031 72.6
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1388.2 1009 70.2
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1349.7 896 74.0
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1343.6 1012 68.3
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1343.6 1018 67.9
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1307.4 933 69.9
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1301.2 1001 67.2
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1290.0 835 75.6
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1288.9 1016 63.5
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1287.7 1017 64.6
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1255.0 1016 63.7
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1187.2 1015 61.0
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1173.7 860 70.7
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1140.9 964 60.0
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 3.2e-307 1058.5 882 58.6
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 4.1e-307 1058.1 822 66.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 4.9e-292 1008.1 727 70.2
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 8.7e-289 997.3 611 79.4
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.9e-283 979.5 611 78.4
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 6.0e-282 974.5 1026 48.9
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.0e-281 972.2 704 70.3
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 9.9e-277 957.2 1018 48.7
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.2e-274 950.3 1017 48.3
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.9e-251 873.2 617 71.3
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 9.7e-248 860.9 991 47.0
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 3.9e-241 839.0 537 78.0
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.6e-237 827.0 507 79.7
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.0e-237 826.6 508 81.1
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.3e-236 823.9 1036 42.6
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.2e-229 800.8 507 78.1
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.1e-222 777.7 504 78.4
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.1e-210 736.9 1019 40.4
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.5e-195 686.8 1016 41.8
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.7e-189 666.8 486 72.2
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 3.0e-164 583.6 393 75.8
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.9e-142 511.1 545 52.5
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.2e-133 481.9 280 91.4
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 6.1e-133 479.6 303 80.2
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 2.6e-128 464.2 1035 30.8
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 3.8e-127 460.3 414 59.4
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.3e-123 447.2 389 59.1
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 1.7e-122 444.9 311 74.3
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.8e-121 441.4 385 62.3
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 7.2e-118 429.5 403 56.3
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 3.7e-106 390.6 468 50.2
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 2.5e-102 377.9 1162 27.2
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 9.5e-102 375.9 232 85.8
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 6.8e-84 316.6 302 54.3
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 2.3e-71 275.0 213 64.8
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-69 268.9 310 44.2
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 2.5e-62 245.0 216 63.4
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.1e-60 238.0 141 82.3
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 9.0e-52 209.9 126 84.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 1.4e-49 202.6 177 57.6
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 1.4e-41 176.0 134 71.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 2.7e-40 171.8 129 68.2
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 2.7e-32 145.2 179 49.2
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.5e-30 139.4 88 76.1
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.3e-30 137.9 84 83.3
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 2.4e-28 132.1 78 88.5
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.0e-27 129.0 183 39.9
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 2.0e-27 129.0 91 69.2
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 5.9e-27 127.5 92 67.4
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 8.5e-26 123.6 76 76.3
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 2.1e-24 119.0 87 72.4
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.7e-24 118.6 68 86.8
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 6.9e-20 104.0 121 49.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.7e-18 99.4 95 57.9
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 3.9e-15 88.2 76 59.2
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 5.1e-15 87.8 130 40.8
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 4.4e-14 84.7 56 67.9
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 2.6e-11 75.5 559 20.6
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-11 74.3 98 41.8
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 2.2e-10 72.4 39 87.2
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 1.5e-09 69.7 45 71.1
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 2.7e-08 65.5 174 28.2
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 2.7e-08 65.5 47 59.6
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 3.6e-08 65.1 121 33.1
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 3.6e-08 65.1 47 70.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.4e-07 63.2 121 32.2
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 4.0e-07 61.6 121 32.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 6.7e-07 60.8 159 31.4
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 1.1e-06 60.1 126 31.7
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 1.1e-06 60.1 47 66.0
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.0e-06 59.3 173 26.0
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 2.6e-06 58.9 141 24.1
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 2.6e-06 58.9 125 27.2


User provided reference genes

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