Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 0.0e+00 1938.3 1008 100.0
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 0.0e+00 1362.1 979 72.8
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1357.0 985 71.1
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1357.0 985 71.1
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 0.0e+00 1255.0 960 69.2
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 1176.0 1035 60.8
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 0.0e+00 1136.3 1117 56.5
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 0.0e+00 1095.1 1096 55.8
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 1082.0 978 59.2
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.9e-312 1074.3 1119 54.6
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.3e-310 1068.9 1073 56.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.0e-310 1068.1 1157 52.2
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 8.7e-289 997.3 969 56.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.4e-286 989.9 991 55.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.2e-284 982.6 998 55.5
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.3e-263 913.7 965 53.6
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 4.2e-227 792.3 984 47.2
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 7.7e-221 771.5 995 47.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.4e-217 760.8 957 46.7
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 7.7e-213 745.0 1022 43.9
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.0e-212 744.6 947 45.3
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.0e-208 730.3 992 44.3
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.7e-202 709.1 956 44.2
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.4e-198 697.6 987 42.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.9e-198 697.2 1065 40.4
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.2e-198 696.4 989 43.6
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 7.8e-197 691.8 989 42.0
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.1e-194 683.7 1075 42.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 8.9e-193 678.3 1103 39.1
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.2e-192 677.9 1019 42.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.2e-191 673.7 990 41.4
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 4.9e-191 672.5 1011 41.0
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 4.9e-191 672.5 964 42.2
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.9e-190 670.6 962 41.5
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.3e-188 663.7 973 41.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 3.9e-188 662.9 975 41.7
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 3.9e-188 662.9 998 44.2
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.1e-187 661.4 946 42.4
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 8.1e-186 655.2 967 40.8
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 9.9e-184 648.3 948 43.5
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 4.9e-183 646.0 956 41.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.1e-182 642.9 1109 38.1
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.3e-180 637.9 1045 40.9
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 3.9e-180 636.3 999 39.3
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 6.6e-180 635.6 824 46.6
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 3.6e-178 629.8 946 40.8
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 8.1e-178 628.6 937 40.9
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.1e-177 628.2 930 42.8
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.8e-177 627.5 1030 39.2
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.4e-177 627.1 945 41.3
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 3.1e-177 626.7 1112 37.1
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.6e-176 623.6 961 40.3
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.6e-176 623.6 1084 36.6
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 5.8e-176 622.5 984 40.7
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.8e-176 622.5 1110 37.7
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 3.8e-175 619.8 946 39.6
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 8.4e-175 618.6 943 40.3
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.1e-174 618.2 777 45.3
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.9e-174 617.5 945 40.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.2e-174 616.3 952 42.5
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 5.4e-174 615.9 962 41.6
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 7.1e-174 615.5 941 41.0
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 4.6e-173 612.8 966 39.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.0e-173 612.5 948 40.7
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.7e-172 610.9 952 39.5
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 3.9e-172 609.8 941 40.7
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 3.9e-172 609.8 941 40.7
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 3.9e-172 609.8 949 40.6
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.9e-171 607.4 953 39.6
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.9e-171 607.4 1069 37.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.9e-171 607.4 970 41.2
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.3e-171 606.7 942 40.7
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.1e-166 591.7 960 38.0
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 7.1e-166 589.0 1058 36.7
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.1e-165 587.4 942 39.6
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.1e-165 587.4 943 39.8
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 4.6e-165 586.3 943 41.6
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.3e-164 583.9 1074 37.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-162 576.6 1044 39.3
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.6e-162 576.6 958 38.6
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 4.8e-162 576.2 1046 39.3
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.8e-159 566.6 1035 36.2
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.4e-158 564.7 945 38.0
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.5e-157 560.1 953 39.5
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.0e-157 559.3 1091 37.4
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-156 557.0 839 40.2
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.5e-155 554.7 752 45.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 3.1e-153 547.0 977 39.3
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.5e-152 544.7 825 39.9
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.2e-151 540.8 1184 33.5
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.9e-150 537.7 1098 35.6
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 7.9e-149 532.3 540 50.9
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.0e-148 530.4 997 35.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 5.1e-148 529.6 937 36.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 4.8e-146 523.1 971 34.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.1e-145 521.9 947 37.0
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.5e-136 491.5 937 36.2
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 8.5e-135 485.7 961 37.1
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.4e-132 478.4 720 38.8
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.1e-129 467.2 837 36.3
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.8e-124 451.4 679 43.9
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.5e-123 448.4 649 41.9
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 4.8e-122 443.4 977 35.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 3.2e-118 430.6 952 32.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.2e-118 430.3 717 41.3
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-110 405.6 938 29.7
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.8e-106 391.0 857 33.8
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.3e-103 382.1 500 42.2
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.6e-101 374.0 284 60.9
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 6.6e-95 353.2 483 41.4
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 9.5e-86 322.8 515 35.5
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 3.7e-82 310.8 497 37.2
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.3e-78 297.4 327 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.1e-72 278.5 473 34.9
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 6.6e-71 273.5 594 33.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.3e-57 226.5 292 44.9
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-52 212.6 631 29.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-52 212.2 228 51.3
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 4.9e-50 204.1 217 52.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 9.3e-49 199.9 227 47.6
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.5e-48 198.0 572 31.1
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.0e-47 196.4 305 42.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 8.4e-42 176.8 295 36.6
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.3e-39 168.7 262 36.3
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.1e-39 167.5 237 44.3
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 9.6e-38 163.3 193 44.0
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.4e-36 159.5 131 58.8
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.4e-35 154.8 462 26.4
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.7e-34 152.5 249 40.6
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.6e-32 144.4 392 31.9
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-31 142.9 245 38.8
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.8e-29 134.4 212 40.1
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 3.1e-28 131.7 163 45.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.4e-27 128.3 212 40.1
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-24 119.8 550 29.3
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-23 116.7 127 50.4
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.7e-22 110.9 285 30.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 4.8e-21 107.8 208 37.5
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.4e-20 106.3 121 48.8
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.6e-19 102.1 186 35.5
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.7e-19 100.5 113 47.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.7e-19 100.5 214 32.7
VMungo0464G1806 Vigna mungo HOM05D009237 ORTHO05D010310 3.3e-14 85.1 60 66.7
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.4e-14 84.7 191 32.5
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 4.8e-13 81.3 202 31.7
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 7.7e-11 73.9 164 36.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 4.7e-08 64.7 137 31.4
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 1.8e-07 62.8 69 47.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 3.0e-07 62.0 51 52.9


User provided reference genes

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