Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 0.0e+00 3349.3 1739 100.0
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 0.0e+00 2051.2 1749 63.4
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.7e-308 1063.5 1031 58.2
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.0e-273 946.4 681 72.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.4e-214 750.7 660 61.1
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.4e-209 734.2 781 54.3
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 5.1e-196 689.9 630 59.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.2e-186 656.4 658 54.1
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.1e-185 653.7 690 52.3
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.2e-178 629.4 661 52.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.2e-176 625.5 687 51.8
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.1e-173 613.2 652 52.6
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.9e-172 610.5 756 47.9
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.7e-170 605.1 683 50.2
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.0e-168 598.2 677 49.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 7.9e-165 586.3 626 52.1
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 5.1e-164 583.6 652 51.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 5.2e-156 557.0 694 47.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.7e-154 550.8 738 43.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 6.8e-148 530.0 734 43.1
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.8e-148 529.6 557 50.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.7e-147 526.9 444 60.6
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 4.1e-145 520.8 687 44.8
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 9.1e-145 519.6 577 50.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.2e-143 515.0 766 41.3
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.8e-143 514.2 766 40.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.9e-138 497.3 686 42.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 3.1e-137 494.6 757 41.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.7e-136 491.5 676 45.4
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 9.5e-134 483.0 626 46.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.6e-133 482.3 688 42.4
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.4e-129 468.4 610 45.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.2e-129 468.0 685 42.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-128 466.1 371 67.4
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.2e-128 466.1 681 42.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.7e-128 464.9 667 42.1
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.5e-128 464.5 717 40.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 5.0e-127 460.7 392 62.5
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.5e-126 458.4 690 40.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 4.3e-126 457.6 685 42.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 5.6e-126 457.2 671 40.5
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.2e-125 456.1 667 41.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.2e-125 453.8 753 39.2
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.0e-124 453.0 640 42.7
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-124 452.6 729 39.8
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.1e-121 443.0 708 38.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-121 442.6 750 38.1
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 5.4e-121 440.7 660 41.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 2.1e-117 428.7 660 40.8
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.1e-117 428.7 752 36.6
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.4e-116 426.0 627 42.7
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.2e-115 422.9 857 33.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 8.3e-114 416.8 673 39.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 8.3e-114 416.8 429 54.1
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.2e-112 412.9 1883 24.4
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.6e-112 412.5 662 38.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.5e-112 411.4 672 38.7
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-111 409.5 792 35.2
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.4e-108 399.4 1738 25.3
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.5e-107 396.0 1739 25.4
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.7e-106 392.5 848 33.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.4e-105 388.7 339 63.1
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.2e-105 388.3 1739 25.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 5.1e-103 380.9 1749 24.9
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.3e-102 378.3 1746 24.4
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 4.3e-102 377.9 672 36.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.2e-99 369.8 745 34.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 9.9e-99 366.7 793 35.1
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 9.9e-99 366.7 554 40.8
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.6e-96 359.4 466 44.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.3e-95 356.3 800 33.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 3.3e-94 351.7 658 34.8
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.3e-94 351.3 319 55.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 9.6e-94 350.1 410 50.7
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 4.0e-92 344.7 649 33.9
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.0e-92 344.7 326 53.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.0e-92 344.7 663 33.6
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.7e-90 339.3 691 35.0
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.1e-89 336.7 712 33.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.1e-89 336.7 660 33.0
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.2e-88 333.2 662 34.6
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.7e-88 332.0 713 33.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.0e-88 330.9 655 35.3
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.0e-87 330.1 657 34.1
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.3e-87 329.7 691 37.3
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 4.3e-86 324.7 796 32.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.6e-85 322.8 773 33.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.4e-84 318.9 729 32.2
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.6e-83 315.5 305 53.1
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-82 313.2 433 45.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.7e-82 312.8 678 33.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.2e-82 312.4 279 58.8
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.9e-82 311.2 271 57.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 4.9e-82 311.2 464 43.5
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-81 310.1 312 50.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.3e-81 307.0 315 50.2
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 2.3e-79 302.4 307 52.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.1e-79 301.2 273 55.3
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 8.7e-79 300.4 317 50.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 3.3e-78 298.5 697 32.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.4e-76 293.1 440 38.9
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 7.6e-75 287.3 845 29.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.1e-72 279.3 324 46.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.1e-72 279.3 712 30.3
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 8.7e-71 273.9 321 45.2
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.1e-70 273.5 304 49.0
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-67 263.1 683 30.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 3.4e-67 261.9 647 31.1
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 4.5e-67 261.5 593 32.4
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 7.6e-67 260.8 344 44.2
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.2e-66 259.2 655 31.1
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.5e-66 257.7 224 56.2
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.5e-65 255.8 316 43.4
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.6e-64 251.9 267 49.4
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.8e-63 249.6 714 29.3
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.3e-63 249.2 549 33.7
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.7e-63 247.7 330 41.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.5e-62 245.7 317 44.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.5e-59 236.5 689 29.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.0e-55 223.8 236 48.7
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.4e-55 223.4 765 27.2
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-54 220.3 586 33.1
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-54 219.9 311 42.8
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.8e-52 213.0 651 29.5
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.2e-51 210.3 308 47.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.9e-49 203.0 277 42.6
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.5e-38 166.8 227 42.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-38 166.4 188 46.3
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-38 166.4 188 46.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.0e-38 166.4 122 70.5
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 7.0e-36 157.9 186 43.0
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.7e-35 156.0 309 34.0
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 5.5e-33 148.3 223 39.9
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 3.4e-30 139.0 255 37.3
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.8e-29 135.2 245 36.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.9e-27 128.3 126 52.4
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.5e-26 124.8 149 51.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.9e-25 123.2 234 37.6
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 4.2e-25 122.1 116 57.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 9.5e-25 120.9 185 35.7
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.7e-24 119.4 118 52.5
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 4.7e-24 118.6 185 36.2
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.2e-22 114.0 126 47.6
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 5.7e-22 111.7 206 32.5
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 5.7e-22 111.7 102 52.0
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 9.8e-22 110.9 173 35.3
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.4e-20 106.3 177 36.7
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 5.9e-19 101.7 153 35.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 5.9e-19 101.7 135 40.7
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.3e-18 99.8 165 37.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.6e-16 93.6 193 32.1
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 8.9e-15 87.8 135 39.3
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.3e-13 84.0 127 38.6
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.1e-12 80.9 82 56.1
arahy.Tifrunner.gnm1.ann1.369X3S Arachis hypogaea HOM05D004076 ORTHO05D004606 1.6e-11 77.0 182 31.9
Medtr8g463810 Medicago truncatula HOM05D000208 ORTHO05D000130 3.9e-10 72.4 62 62.9
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.9e-09 70.1 95 40.0
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 4.3e-09 68.9 193 30.1
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-09 67.8 62 59.7
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 6.2e-08 65.1 65 56.9
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 2.6e-06 59.7 113 32.7


User provided reference genes

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