Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 2.0e-278 961.8 489 100.0
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 3.1e-231 805.1 490 82.0
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.0e-226 790.0 481 83.2
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 4.0e-223 778.1 482 82.8
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.1e-199 698.7 485 73.0
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 6.4e-197 691.0 486 73.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 5.4e-196 688.0 495 72.7
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 8.1e-192 674.1 484 71.3
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 3.1e-191 672.2 494 70.9
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 3.1e-191 672.2 501 69.5
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.7e-168 595.5 482 63.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 2.4e-167 592.8 496 59.5
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 6.9e-167 591.3 488 61.5
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 6.9e-167 591.3 489 61.6
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 9.1e-167 590.9 477 61.0
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 4.5e-166 588.6 480 63.3
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 2.9e-165 585.9 492 62.0
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 7.9e-163 577.8 467 62.1
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.0e-162 577.4 458 62.9
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 8.8e-162 574.3 488 60.7
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.5e-161 573.5 471 60.5
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.4e-159 567.0 502 59.0
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.8e-159 566.6 482 60.6
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 3.1e-159 565.8 458 61.6
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 4.1e-159 565.5 469 59.7
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.3e-159 565.1 466 59.9
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.0e-159 564.7 491 58.2
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 9.1e-159 564.3 466 59.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 5.9e-158 561.6 475 59.4
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.5e-157 558.1 463 59.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.5e-157 558.1 463 58.7
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 4.2e-156 555.4 469 59.1
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.1e-155 551.6 468 59.2
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.2e-154 548.5 468 58.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 6.7e-154 548.1 464 59.9
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 4.4e-153 545.4 385 67.8
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 2.2e-152 543.1 488 57.0
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.4e-151 540.4 476 58.6
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.4e-151 539.7 466 58.4
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 2.4e-151 539.7 448 60.9
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.5e-150 535.8 448 59.4
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 1.0e-149 534.3 476 58.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.9e-149 532.7 462 58.2
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.0e-149 531.9 493 57.6
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.5e-149 531.2 436 59.9
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.9e-148 530.0 457 59.7
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.2e-148 528.1 479 58.0
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 7.2e-148 528.1 454 59.0
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.2e-147 527.3 467 57.4
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.1e-147 526.6 464 58.4
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.8e-146 523.5 448 59.8
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 2.3e-146 523.1 465 55.9
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 3.0e-146 522.7 451 58.5
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 8.8e-146 521.2 463 56.2
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.6e-145 519.6 468 56.8
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 4.4e-145 518.8 462 58.0
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 7.5e-145 518.1 452 56.9
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.7e-144 516.9 396 62.1
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.8e-144 516.2 396 61.9
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 3.7e-144 515.8 456 57.0
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 4.8e-144 515.4 457 58.0
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.8e-144 515.4 480 56.2
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 3.1e-143 512.7 497 53.9
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 7.0e-143 511.5 468 56.0
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.2e-142 510.8 460 57.6
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.6e-142 510.4 461 56.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.0e-142 510.0 456 56.8
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.8e-141 505.8 456 56.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 8.5e-141 504.6 475 57.1
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 7.2e-140 501.5 476 55.3
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.1e-139 500.0 453 55.2
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 8.0e-139 498.0 423 58.4
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.4e-138 497.3 480 56.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.8e-138 496.9 455 57.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 5.2e-138 495.4 447 57.9
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.2e-137 494.2 442 57.0
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 2.0e-137 493.4 461 56.8
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.6e-137 493.0 477 55.8
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 7.5e-137 491.5 441 57.6
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 7.5e-137 491.5 445 55.3
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 7.5e-137 491.5 484 52.5
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.3e-136 490.7 441 57.4
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.7e-136 490.3 438 58.0
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.7e-136 489.2 446 57.6
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 4.9e-136 488.8 460 56.5
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 6.3e-136 488.4 468 53.6
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.1e-135 487.6 446 56.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.0e-134 483.4 478 51.0
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.7e-133 480.3 329 69.6
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.3e-132 475.7 460 59.1
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.8e-131 473.0 402 59.5
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 8.3e-128 461.5 469 55.0
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.8e-122 443.7 332 63.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 3.7e-112 409.5 478 48.3
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 8.3e-112 408.3 478 48.3
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.4e-111 407.5 456 48.0
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.7e-110 403.3 521 44.7
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 3.3e-108 396.4 341 61.9
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 8.1e-107 391.7 402 50.7
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.8e-106 390.6 416 52.2
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.1e-103 379.4 404 49.0
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 9.6e-100 368.2 419 47.7
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.4e-90 337.8 326 54.9
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.0e-81 307.4 206 68.4
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.6e-70 269.6 336 50.9
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 5.7e-68 262.7 405 39.8
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.8e-66 257.7 192 63.0
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 2.0e-57 227.6 197 59.9
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.1e-44 185.3 209 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 6.7e-37 159.5 319 32.0
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 3.6e-30 137.1 135 54.8
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.7e-25 120.9 106 52.8
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 7.7e-25 119.4 78 71.8
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.0e-24 119.0 182 41.8
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.7e-19 101.7 289 31.5
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.0e-16 90.1 213 29.1
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.0e-16 90.1 213 29.1
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 4.3e-15 87.0 129 43.4
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.1e-14 84.7 307 21.8
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.3e-08 64.7 84 44.0
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 5.6e-07 60.1 136 21.3
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 7.3e-07 59.7 130 24.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.1e-06 58.2 151 24.5
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 8.0e-06 56.2 135 21.5


User provided reference genes

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