Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35371 Trifolium pratense HOM05D003982 ORTHO05D004831 7.8e-51 203.8 122 100.0
TPR.G34316 Trifolium pratense HOM05D003982 ORTHO05D004831 5.6e-49 197.6 122 93.4
Medtr2g096300 Medicago truncatula HOM05D003982 ORTHO05D004831 4.6e-35 151.4 81 91.4
Psat5g282440 Pisum sativum HOM05D003982 ORTHO05D004831 2.3e-34 149.1 92 82.6
Lj3g0005665 Lotus japonicus HOM05D003982 ORTHO05D004831 2.1e-32 142.5 93 77.4
Glyma.15G041700 Glycine max HOM05D003982 ORTHO05D004831 8.9e-31 137.1 93 76.3
arahy.Tifrunner.gnm1.ann1.95NMQN Arachis hypogaea HOM05D003982 ORTHO05D004831 4.4e-30 134.8 93 78.5
arahy.Tifrunner.gnm1.ann1.AUFX4T Arachis hypogaea HOM05D003982 ORTHO05D004831 4.4e-30 134.8 93 78.5
Atru.chr3.3810 Acer truncatum HOM05D003982 ORTHO05D004831 2.2e-29 132.5 79 82.3
COL.COLO4_18437 Corchorus olitorius HOM05D003982 ORTHO05D004831 2.2e-29 132.5 77 84.4
Thecc.09G328700 Theobroma cacao HOM05D003982 ORTHO05D004831 2.2e-29 132.5 78 83.3
Duzib168G2133 Durio zibethinus HOM05D003982 ORTHO05D004831 2.9e-29 132.1 72 86.1
Glyma.11G143500 Glycine max HOM05D003982 ORTHO05D004831 2.9e-29 132.1 79 81.0
Gohir.A03G038100 Gossypium hirsutum HOM05D003982 ORTHO05D004831 2.9e-29 132.1 77 83.1
Carub.0008s2039 Capsella rubella HOM05D003982 ORTHO05D004831 3.8e-29 131.7 77 83.1
Duzib150G0206 Durio zibethinus HOM05D003982 ORTHO05D004831 3.8e-29 131.7 77 83.1
Lalb_Chr14g0374961 Lupinus albus HOM05D003982 ORTHO05D004831 3.8e-29 131.7 72 86.1
VMungo1080G1641 Vigna mungo HOM05D003982 ORTHO05D004831 4.9e-29 131.3 94 70.2
AL8G36260 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 8.4e-29 130.6 77 81.8
AT5G59740 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 1.1e-28 130.2 77 81.8
Sp6g21410 Schrenkiella parvula HOM05D003982 ORTHO05D004831 1.4e-28 129.8 77 81.8
Lj3g0020703 Lotus japonicus HOM05D003982 ORTHO05D004831 1.9e-28 129.4 72 84.7
Gohir.D03G130300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 2.4e-28 129.0 82 78.0
Gorai.003G137000 Gossypium raimondii HOM05D003982 ORTHO05D004831 2.4e-28 129.0 82 78.0
AT3G46180 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 3.2e-28 128.6 76 78.9
PSO339G1754 Papaver somniferum HOM05D003982 ORTHO05D004831 4.2e-28 128.3 81 77.8
BolC2t07323H Brassica oleracea HOM05D003982 ORTHO05D004831 5.4e-28 127.9 82 76.8
CARHR273320 Cardamine hirsuta HOM05D003982 ORTHO05D004831 5.4e-28 127.9 77 80.5
ClCG02G020490 Citrullus lanatus HOM05D003982 ORTHO05D004831 5.4e-28 127.9 72 81.9
MELO3C013673.2 Cucumis melo HOM05D003982 ORTHO05D004831 5.4e-28 127.9 72 81.9
CsaV3_6G022130 Cucumis sativus L. HOM05D003982 ORTHO05D004831 5.4e-28 127.9 72 81.9
A02p06910 Brassica napus HOM05D003982 ORTHO05D004831 7.1e-28 127.5 77 80.5
C02p12210 Brassica napus HOM05D003982 ORTHO05D004831 7.1e-28 127.5 82 76.8
C03p13320 Brassica napus HOM05D003982 ORTHO05D004831 7.1e-28 127.5 72 83.3
BolC3t13794H Brassica oleracea HOM05D003982 ORTHO05D004831 7.1e-28 127.5 72 83.3
BraA02t05770Z Brassica rapa HOM05D003982 ORTHO05D004831 7.1e-28 127.5 82 76.8
Carub.0005s1200 Capsella rubella HOM05D003982 ORTHO05D004831 7.1e-28 127.5 72 81.9
GSVIVG01025043001 Vitis vinifera HOM05D003982 ORTHO05D004831 7.1e-28 127.5 80 77.5
BcaB05g22537 Brassica carinata HOM05D003982 ORTHO05D004831 9.3e-28 127.1 82 76.8
Prupe.6G085700 Prunus persica HOM05D003982 ORTHO05D004831 9.3e-28 127.1 81 74.1
TAR633G2721 Trochodendron aralioides HOM05D003982 ORTHO05D004831 9.3e-28 127.1 77 81.8
PSO206G0007 Papaver somniferum HOM05D003982 ORTHO05D004831 1.2e-27 126.7 74 82.4
Hund05010 Selenicereus undatus HOM05D003982 ORTHO05D004831 1.2e-27 126.7 80 80.0
Actinidia03777 Actinidia chinensis HOM05D003982 ORTHO05D004831 1.6e-27 126.3 82 75.6
Thhalv10002597m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 1.6e-27 126.3 72 81.9
Thhalv10014012m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 1.6e-27 126.3 77 80.5
A03p11500 Brassica napus HOM05D003982 ORTHO05D004831 2.1e-27 125.9 72 81.9
BraA03t10464Z Brassica rapa HOM05D003982 ORTHO05D004831 2.1e-27 125.9 72 81.9
Cpa.g.sc252.18 Carica papaya HOM05D003982 ORTHO05D004831 2.1e-27 125.9 92 71.7
TWI79G0386 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 2.1e-27 125.9 72 83.3
TAR636G3601 Trochodendron aralioides HOM05D003982 ORTHO05D004831 2.1e-27 125.9 77 80.5
Eucgr.J02078 Eucalyptus grandis HOM05D003982 ORTHO05D004831 2.7e-27 125.6 94 71.3
EL10Ac7g15957 Beta vulgaris HOM05D003982 ORTHO05D004831 3.5e-27 125.2 81 79.0
MD11G1114800 Malus domestica HOM05D003982 ORTHO05D004831 3.5e-27 125.2 72 81.9
Cfa011440 Carpinus fangiana HOM05D003982 ORTHO05D004831 6.0e-27 124.4 93 69.9
CiPaw.13G100100 Carya illinoinensis HOM05D003982 ORTHO05D004831 6.0e-27 124.4 76 77.6
Haze_24023 Corylus avellana HOM05D003982 ORTHO05D004831 6.0e-27 124.4 72 83.3
Lalb_Chr22g0350001 Lupinus albus HOM05D003982 ORTHO05D004831 6.0e-27 124.4 92 71.7
Aqoxy4G03037 Aquilegia oxysepala HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 81.9
AL5G24910 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 7.8e-27 124.0 76 75.0
BcaC04g19625 Brassica carinata HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 80.6
A10p16970 Brassica napus HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 80.6
C09p52220 Brassica napus HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 80.6
BolC9t58089H Brassica oleracea HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 80.6
BraA10t43781Z Brassica rapa HOM05D003982 ORTHO05D004831 7.8e-27 124.0 72 80.6
CANSAT54G2978 Cannabis sativa HOM05D003982 ORTHO05D004831 7.8e-27 124.0 78 78.2
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 7.8e-27 124.0 82 76.8
Rhsim13G0087500 Rhododendron simsii HOM05D003982 ORTHO05D004831 1.3e-26 123.2 72 80.6
TWI31G0176 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 1.3e-26 123.2 72 80.6
BcaC01g06551 Brassica carinata HOM05D003982 ORTHO05D004831 1.7e-26 122.9 72 81.9
FvH4_3g34850 Fragaria vesca HOM05D003982 ORTHO05D004831 1.7e-26 122.9 92 68.5
Gohir.A05G098200 Gossypium hirsutum HOM05D003982 ORTHO05D004831 1.7e-26 122.9 72 83.3
MD03G1100700 Malus domestica HOM05D003982 ORTHO05D004831 1.7e-26 122.9 72 80.6
Sed0000090 Sechium edule HOM05D003982 ORTHO05D004831 1.7e-26 122.9 79 78.5
THA.LOC104810797 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 1.7e-26 122.9 77 79.2
Aa31LG4G15290 Aethionema arabicum HOM05D003982 ORTHO05D004831 3.0e-26 122.1 82 75.6
CiPaw.14G072900 Carya illinoinensis HOM05D003982 ORTHO05D004831 3.9e-26 121.7 71 84.5
FAN25G3842 Fragaria x ananassa HOM05D003982 ORTHO05D004831 3.9e-26 121.7 92 67.4
FAN11G3073 Fragaria x ananassa HOM05D003982 ORTHO05D004831 5.1e-26 121.3 92 67.4
Gohir.D05G098300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 5.1e-26 121.3 72 81.9
Gorai.009G101900 Gossypium raimondii HOM05D003982 ORTHO05D004831 5.1e-26 121.3 72 81.9
Sabra16G0141000 Salix brachista HOM05D003982 ORTHO05D004831 5.1e-26 121.3 72 79.2
VMungo1127G2086 Vigna mungo HOM05D003982 ORTHO05D004831 6.6e-26 120.9 95 68.4
FAN16G2231 Fragaria x ananassa HOM05D003982 ORTHO05D004831 8.7e-26 120.6 92 67.4
Rhsim01G0224300 Rhododendron simsii HOM05D003982 ORTHO05D004831 8.7e-26 120.6 94 67.0
Sc21g0005410 Simmondsia chinensis HOM05D003982 ORTHO05D004831 8.7e-26 120.6 71 78.9
THA.LOC104799459 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 8.7e-26 120.6 77 77.9
DCAR_006010 Daucus carota HOM05D003982 ORTHO05D004831 1.1e-25 120.2 71 80.3
FAN21G4048 Fragaria x ananassa HOM05D003982 ORTHO05D004831 1.1e-25 120.2 72 77.8
Sp5g15450 Schrenkiella parvula HOM05D003982 ORTHO05D004831 1.1e-25 120.2 72 76.4
Ah.08g214870 Amaranthus hybridus HOM05D003982 ORTHO05D004831 1.5e-25 119.8 77 75.3
Potri.001G234800 Populus trichocarpa HOM05D003982 ORTHO05D004831 1.5e-25 119.8 77 75.3
Migut.N02659 Erythranthe guttata HOM05D003982 ORTHO05D004831 1.9e-25 119.4 77 79.2
Lj1A161T61 Lonicera japonica HOM05D003982 ORTHO05D004831 1.9e-25 119.4 68 83.8
CARHR154570 Cardamine hirsuta HOM05D003982 ORTHO05D004831 3.3e-25 118.6 72 73.6
HanXRQChr11g0340301 Helianthus annuus HOM05D003982 ORTHO05D004831 4.3e-25 118.2 77 77.9
RcHm_v2.0_Chr5g0062701 Rosa chinensis HOM05D003982 ORTHO05D004831 4.3e-25 118.2 72 75.0
EL10Ac4g08133 Beta vulgaris HOM05D003982 ORTHO05D004831 5.6e-25 117.9 80 72.5
CAN.G241.39 Capsicum annuum HOM05D003982 ORTHO05D004831 5.6e-25 117.9 77 77.9
DCAR_023863 Daucus carota HOM05D003982 ORTHO05D004831 5.6e-25 117.9 71 78.9
PGR119G1985 Punica granatum HOM05D003982 ORTHO05D004831 5.6e-25 117.9 72 77.8
Cc01_g12230 Coffea canephora HOM05D003982 ORTHO05D004831 7.3e-25 117.5 71 78.9
Lj2C1051T6 Lonicera japonica HOM05D003982 ORTHO05D004831 7.3e-25 117.5 71 78.9
Medtr4g063040 Medicago truncatula HOM05D003982 ORTHO05D004831 7.3e-25 117.5 72 79.2
Solyc06g005290.3 Solanum lycopersicum HOM05D003982 ORTHO05D004831 7.3e-25 117.5 93 69.9
Sopen06g001270 Solanum pennellii HOM05D003982 ORTHO05D004831 7.3e-25 117.5 93 69.9
Sopen11g030820 Solanum pennellii HOM05D003982 ORTHO05D004831 9.6e-25 117.1 71 81.7
PGSC0003DMG400010880 Solanum tuberosum HOM05D003982 ORTHO05D004831 9.6e-25 117.1 72 80.6
PGSC0003DMG400015563 Solanum tuberosum HOM05D003982 ORTHO05D004831 9.6e-25 117.1 71 81.7
Lsat_1_v5_gn_5_166500 Lactuca sativa HOM05D003982 ORTHO05D004831 1.6e-24 116.3 80 75.0
AUR62014952 Chenopodium quinoa HOM05D003982 ORTHO05D004831 2.8e-24 115.5 80 72.5
AUR62035920 Chenopodium quinoa HOM05D003982 ORTHO05D004831 2.8e-24 115.5 80 71.2
AUR62035919 Chenopodium quinoa HOM05D003982 ORTHO05D004831 6.2e-24 114.4 80 70.0
unitig_744.g24621 Utricularia gibba HOM05D003982 ORTHO05D004831 6.2e-24 114.4 78 73.1
AUR62029186 Chenopodium quinoa HOM05D003982 ORTHO05D004831 1.1e-23 113.6 80 71.2
ECA248G2684 Erigeron canadensis HOM05D003982 ORTHO05D004831 1.4e-23 113.2 71 77.5
MSTRG.12630 Avicennia marina HOM05D003982 ORTHO05D004831 1.8e-23 112.8 77 74.0
HanXRQChr01g0009941 Helianthus annuus HOM05D003982 ORTHO05D004831 3.1e-23 112.1 71 77.5
Hma1.2p1_0846F.1_g227680 Hydrangea macrophylla HOM05D003982 ORTHO05D004831 5.3e-23 111.3 64 82.8
Glyma.13G332500 Glycine max HOM05D003982 ORTHO05D004831 6.9e-23 110.9 94 67.0
SHI07539 Sapria himalayana HOM05D003982 ORTHO05D004831 5.8e-22 107.8 71 74.6
BcaB05g22572 Brassica carinata HOM05D003982 ORTHO05D004831 7.6e-22 107.5 73 74.0
SGA_v2.0_scaffold39G15249 Striga asiatica HOM05D003982 ORTHO05D004831 7.6e-22 107.5 110 57.3
Zm00001eb355590 Zea mays HOM05D003982 ORTHO05D004831 1.7e-21 106.3 68 75.0
CAN.G820.8 Capsicum annuum HOM05D003982 ORTHO05D004831 2.2e-21 105.9 62 83.9
HPP92_021083 Vanilla planifolia HOM05D003982 ORTHO05D004831 2.2e-21 105.9 79 67.1
Zm00001eb266330 Zea mays HOM05D003982 ORTHO05D004831 3.8e-21 105.1 68 73.5
Actinidia33854 Actinidia chinensis HOM05D003982 ORTHO05D004831 1.4e-20 103.2 66 75.8
Os05g0115700 Oryza sativa ssp. japonica HOM05D003982 ORTHO05D004831 1.9e-20 102.8 67 74.6
MD05G1008500 Malus domestica HOM05D003982 ORTHO05D004831 4.2e-20 101.7 71 70.4
vmacro03118 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 2.7e-19 99.0 95 58.9
Nitab4.5_0010238g0010 Nicotiana tabacum HOM05D003982 ORTHO05D004831 4.6e-19 98.2 71 73.2
ATR0782G014 Amborella trichopoda HOM05D003982 ORTHO05D004831 6.0e-19 97.8 63 74.6
Oeu058524.1 Olea europaea HOM05D003982 ORTHO05D004831 2.3e-18 95.9 119 50.4
Phvul.L002043 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 3.0e-18 95.5 51 86.3
vmacro14502 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 5.1e-18 94.7 53 83.0
QL01p033527 Quercus lobata HOM05D003982 ORTHO05D004831 4.3e-17 91.7 53 83.0
Glyma.12G066800 Glycine max HOM05D003982 ORTHO05D004831 6.2e-16 87.8 48 85.4
MBI05_g07846_MAGBIO Magnolia biondii HOM05D003982 ORTHO05D004831 8.1e-16 87.4 54 75.9
SalBow3G3142 Salvia bowleyana HOM05D003982 ORTHO05D004831 8.1e-16 87.4 53 79.2
Nitab4.5_0000070g0080 Nicotiana tabacum HOM05D003982 ORTHO05D004831 1.4e-15 86.7 51 82.4
Mapoly0039s0069 Marchantia polymorpha HOM05D003982 ORTHO05D004831 2.4e-15 85.9 71 53.5
Phvul.011G067700 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 2.0e-14 82.8 48 79.2
SMO358G0604 Selaginella moellendorffii HOM05D003982 ORTHO05D004831 2.0e-14 82.8 63 58.7
CAN.G819.8 Capsicum annuum HOM05D003982 ORTHO05D004831 5.8e-14 81.3 52 75.0
Dinv26277 Davidia involucrata HOM05D003982 ORTHO05D004831 5.8e-14 81.3 48 77.1
Oeu040286.1 Olea europaea HOM05D003982 ORTHO05D004831 7.6e-14 80.9 48 81.2
Oeu041008.1 Olea europaea HOM05D003982 ORTHO05D004831 4.9e-13 78.2 48 75.0
Pp3c14_24680 Physcomitrium patens HOM05D003982 ORTHO05D004831 1.9e-12 76.3 72 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2665 Anthoceros agrestis HOM05D003982 ORTHO05D004831 7.1e-12 74.3 71 50.7
Cre16.g676900 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 2.1e-08 62.8 69 44.9
PRCOL_00003646 Prasinoderma coloniale HOM05D003982 ORTHO05D004831 2.8e-08 62.4 70 48.6
Cre06.g260100 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 1.1e-07 60.5 72 47.2
MCO04G404 Micromonas commoda HOM05D003982 ORTHO05D004831 4.0e-07 58.5 73 43.8
CBR_g22484 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-06 55.8 57 47.4


User provided reference genes

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