Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35306 Trifolium pratense HOM05D003216 ORTHO05D002268 1.3e-114 416.4 202 100.0
TPR.G8192 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-83 313.5 158 94.3
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 4.1e-81 305.1 188 76.6
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 1.1e-78 297.0 188 75.0
TPR.G31505 Trifolium pratense HOM05D003216 ORTHO05D002268 1.0e-76 290.4 161 88.2
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 2.8e-74 282.3 181 72.9
TPR.G9575 Trifolium pratense HOM05D003216 ORTHO05D009933 2.1e-69 266.2 188 67.0
TPR.G28022 Trifolium pratense HOM05D003216 ORTHO05D002268 1.0e-68 263.8 170 71.2
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 1.5e-67 260.0 153 77.8
TPR.G22718 Trifolium pratense HOM05D003216 ORTHO05D002268 3.7e-66 255.4 170 69.4
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 5.2e-60 235.0 188 59.0
TPR.G20309 Trifolium pratense HOM05D003216 ORTHO05D002268 6.0e-56 221.5 133 75.9
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.5e-54 216.9 118 88.1
TPR.G22805 Trifolium pratense HOM05D003216 ORTHO05D002268 2.1e-48 196.4 109 78.9
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 8.1e-45 184.5 191 49.2
TPR.G38871 Trifolium pratense HOM05D003216 ORTHO05D002268 1.8e-44 183.3 122 68.9
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 5.2e-44 181.8 185 49.7
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 4.4e-43 178.7 98 86.7
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 1.5e-38 163.7 194 42.3
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 1.3e-37 160.6 194 41.2
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 2.4e-36 156.4 111 68.5
TPR.G22845 Trifolium pratense HOM05D003216 ORTHO05D002268 9.0e-36 154.5 167 46.7
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 2.6e-35 152.9 108 67.6
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-34 148.3 179 43.0
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 9.3e-33 144.4 176 43.2
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-32 143.7 129 55.8
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 4.6e-32 142.1 160 45.6
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 4.6e-32 142.1 129 55.8
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 6.6e-31 138.3 140 46.4
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-30 136.3 163 41.7
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-30 136.3 171 40.9
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 9.6e-30 134.4 156 40.4
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 9.6e-30 134.4 167 41.9
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-29 132.5 180 37.2
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-29 132.5 175 37.7
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 4.8e-29 132.1 180 37.2
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-29 131.7 169 40.2
TPR.G40558 Trifolium pratense HOM05D003216 ORTHO05D002268 1.1e-28 131.0 165 40.6
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-28 130.6 158 40.5
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-28 130.2 159 40.3
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 4.0e-28 129.0 169 39.6
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-28 128.3 180 36.1
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-27 127.5 180 36.7
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-27 127.5 180 37.2
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-27 126.7 159 40.3
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-27 125.9 171 39.2
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 5.8e-27 125.2 169 39.1
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-26 123.6 159 39.6
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-25 120.9 141 42.6
TPR.G1751 Trifolium pratense HOM05D003216 ORTHO05D002268 2.4e-25 119.8 64 92.2
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 5.4e-25 118.6 151 41.1
TPR.G40729 Trifolium pratense HOM05D003216 ORTHO05D002268 5.4e-25 118.6 118 49.2
TPR.G17165 Trifolium pratense HOM05D003216 ORTHO05D002268 3.5e-24 115.9 167 35.3
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-22 110.9 144 37.5
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-22 109.8 142 38.7
TPR.G27562 Trifolium pratense HOM05D003216 ORTHO05D002268 3.3e-22 109.4 99 49.5
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 9.6e-22 107.8 136 40.4
TPR.G17632 Trifolium pratense HOM05D003216 ORTHO05D002268 9.6e-22 107.8 105 49.5
Medtr1g064700 Medicago truncatula HOM05D003216 ORTHO05D002268 4.8e-21 105.5 134 41.8
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-21 105.1 177 31.6
TPR.G32043 Trifolium pratense HOM05D003216 ORTHO05D002268 8.1e-21 104.8 99 47.5
TPR.G40026 Trifolium pratense HOM05D003216 ORTHO05D002268 8.1e-21 104.8 91 53.8
Medtr7g024793 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-20 104.4 116 44.0
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-20 103.6 166 34.3
TPR.G14047 Trifolium pratense HOM05D003216 ORTHO05D002268 3.1e-20 102.8 124 41.9
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-20 101.7 178 34.3
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 9.0e-20 101.3 118 39.8
TPR.G16425 Trifolium pratense HOM05D003216 ORTHO05D002268 2.0e-19 100.1 98 45.9
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-18 97.8 174 33.3
Medtr8g409330 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-18 97.8 170 32.9
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-18 97.4 169 35.5
TPR.G38697 Trifolium pratense HOM05D003216 ORTHO05D002268 8.4e-18 94.7 75 53.3
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 2.5e-17 93.2 157 32.5
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 2.7e-16 89.7 89 47.2
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 2.7e-16 89.7 109 43.1
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 3.5e-16 89.4 173 30.6
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 4.6e-16 89.0 109 41.3
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 4.6e-16 89.0 108 42.6
Medtr6g086765 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-15 85.5 108 42.6
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 1.1e-14 84.3 165 33.9
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.5e-14 84.0 158 30.4
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.9e-14 83.6 157 30.6
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.9e-14 83.6 158 29.7
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 3.3e-14 82.8 145 33.1
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 7.4e-14 81.6 162 30.9
Medtr5g006100 Medicago truncatula HOM05D003216 ORTHO05D004526 7.4e-14 81.6 98 44.9
CSS0009299 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 9.6e-14 81.3 162 29.6
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.3e-13 80.9 145 29.0
CSS0037267 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.8e-13 79.7 157 29.9
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 2.8e-13 79.7 96 44.8
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 3.7e-13 79.3 161 31.7
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 3.7e-13 79.3 161 31.7
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 3.7e-13 79.3 144 30.6
TWI74G1657 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 6.2e-13 78.6 163 32.5
Medtr7g004990 Medicago truncatula HOM05D003216 ORTHO05D002268 8.2e-13 78.2 106 37.7
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 1.4e-12 77.4 161 29.8
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-12 77.0 145 32.4
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 2.4e-12 76.6 158 29.7
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 3.1e-12 76.3 156 28.8
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-12 75.9 76 40.8
CSS0019902 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 5.3e-12 75.5 148 27.0
CSS0030203 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 5.3e-12 75.5 145 27.6
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 5.3e-12 75.5 151 32.5
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.3e-12 75.5 158 27.8
Medtr8g465330 Medicago truncatula HOM05D003216 ORTHO05D002268 5.3e-12 75.5 102 36.3
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 6.9e-12 75.1 163 28.2
Medtr3g104445 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-12 75.1 86 39.5
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 9.0e-12 74.7 96 42.7
Medtr5g032220 Medicago truncatula HOM05D000593 ORTHO05D000562 9.0e-12 74.7 157 29.9
ECA240G3759 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.5e-11 73.9 152 30.3
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 1.5e-11 73.9 146 32.2
Medtr1g111720 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-11 73.9 100 35.0
PSO210G1587 Papaver somniferum HOM05D003216 ORTHO05D002268 1.5e-11 73.9 180 30.6
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 1.5e-11 73.9 162 29.6
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 2.0e-11 73.6 163 30.1
Aqoxy3G00378 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 2.0e-11 73.6 136 36.0
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 2.0e-11 73.6 163 30.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.0e-11 73.6 158 29.7
CSS0004654 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.6e-11 73.2 157 28.7
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.6e-11 73.2 157 25.5
Medtr2g451140 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-11 73.2 80 46.2
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 3.4e-11 72.8 151 31.8
Medtr2g034775 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-11 72.4 96 41.7
Medtr3g072200 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-11 72.4 100 41.0
TWI73G0826 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 5.8e-11 72.0 163 30.7
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 7.6e-11 71.6 89 34.8
Medtr3g463860 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-11 71.6 102 36.3
Medtr5g017770 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-11 71.6 101 40.6
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.3e-10 70.9 152 30.3
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 2.2e-10 70.1 144 30.6
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 2.2e-10 70.1 151 31.1
Medtr2g101530 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-10 70.1 78 41.0
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 3.8e-10 69.3 105 38.1
Medtr3g088695 Medicago truncatula HOM05D003216 ORTHO05D002268 8.4e-10 68.2 79 48.1
PSO339G0458 Papaver somniferum HOM05D000593 ORTHO05D002268 8.4e-10 68.2 180 29.4
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 1.1e-09 67.8 131 31.3
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 1.9e-09 67.0 90 37.8
HanXRQChr08g0215981 Helianthus annuus HOM05D000593 ORTHO05D002268 1.9e-09 67.0 160 28.8
TPR.G29741 Trifolium pratense HOM05D000593 ORTHO05D002268 1.9e-09 67.0 84 41.7
TPR.G30694 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-09 67.0 52 50.0
TWI81G0284 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.9e-09 67.0 132 29.5
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 2.5e-09 66.6 171 25.7
Medtr6g089230 Medicago truncatula HOM05D003216 ORTHO05D004526 2.5e-09 66.6 52 53.8
MD05G1031400 Malus domestica HOM05D000593 ORTHO05D000562 3.2e-09 66.2 162 27.2
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 7.1e-09 65.1 157 28.0
TPR.G19405 Trifolium pratense HOM05D003216 ORTHO05D002268 7.1e-09 65.1 163 25.8
TPR.G22653 Trifolium pratense HOM05D003216 ORTHO05D002268 7.1e-09 65.1 136 29.4
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 9.3e-09 64.7 160 26.2
Medtr5g071980 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-08 64.3 79 39.2
Medtr6g084295 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-08 64.3 52 46.2
TWI36G1645 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 1.2e-08 64.3 142 31.0
Atru.chr11.19 Acer truncatum HOM05D000593 ORTHO05D000562 1.6e-08 63.9 163 25.2
Atru.chr11.22 Acer truncatum HOM05D000593 ORTHO05D000562 1.6e-08 63.9 163 25.2
Medtr1g023090 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-08 63.9 70 42.9
Medtr8g445710 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-08 63.9 91 39.6
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 2.1e-08 63.5 146 26.0
FvH4_5g20623 Fragaria vesca HOM05D000593 ORTHO05D000562 2.1e-08 63.5 186 23.1
FvH4_6g12551 Fragaria vesca HOM05D000593 ORTHO05D002268 2.1e-08 63.5 162 27.8
Medtr5g028280 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-08 63.5 79 40.5
TWI75G0109 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 2.1e-08 63.5 153 27.5
Atru.chr11.1014 Acer truncatum HOM05D000593 ORTHO05D000562 2.7e-08 63.2 144 25.7
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 3.5e-08 62.8 147 27.2
Medtr8g465250 Medicago truncatula HOM05D003216 ORTHO05D002268 3.5e-08 62.8 64 40.6
TWI31G0531 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.6e-08 62.4 152 24.3
Medtr7g055617 Medicago truncatula HOM05D003216 ORTHO05D002268 6.1e-08 62.0 86 37.2
TWI75G1234 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 6.1e-08 62.0 161 26.1
Medtr1g024975 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-07 61.2 54 40.7
Medtr2g067910 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-07 61.2 78 38.5
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.0e-07 61.2 100 32.0
Medtr1g089160 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-07 60.5 87 36.8
Medtr7g033500 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-07 60.5 69 40.6
PSO421G0407 Papaver somniferum HOM05D003216 ORTHO05D002268 1.8e-07 60.5 155 28.4
TWI38G0345 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.3e-07 60.1 158 28.5
PSO017G1706 Papaver somniferum HOM05D003216 ORTHO05D002268 3.0e-07 59.7 141 28.4
Medtr1g103800 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-07 58.9 79 38.0
Medtr1g015680 Medicago truncatula HOM05D003216 ORTHO05D002268 6.7e-07 58.5 69 42.0
CSS0014323 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 8.7e-07 58.2 75 40.0
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 8.7e-07 58.2 153 25.5
Medtr6g004370 Medicago truncatula HOM05D003216 ORTHO05D002268 8.7e-07 58.2 69 37.7
FvH4_5g25511 Fragaria vesca HOM05D000593 ORTHO05D000562 1.1e-06 57.8 186 28.5
Medtr5g060540 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-06 56.6 79 36.7
Medtr6g059570 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-06 56.6 70 38.6
CSS0005100 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 4.3e-06 55.8 111 27.9
Medtr5g413325 Medicago truncatula HOM05D003216 ORTHO05D002268 4.3e-06 55.8 75 37.3
CSS0013856 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 5.7e-06 55.5 147 25.9
Aqoxy1G03120 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 7.4e-06 55.1 144 28.5
TWI59G0546 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 7.4e-06 55.1 127 27.6


User provided reference genes

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