Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 5.2e-51 204.1 106 100.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.8e-44 181.8 106 88.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.9e-41 171.0 104 82.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.2e-39 166.4 106 83.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.2e-39 166.4 106 83.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.3e-38 162.2 105 81.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.5e-37 158.7 105 81.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.8e-32 142.5 105 76.2
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.9e-29 132.5 106 73.6
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 5.6e-29 131.0 109 67.0
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.6e-28 129.4 106 67.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.6e-28 129.4 105 69.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 4.7e-28 127.9 105 67.6
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 6.2e-28 127.5 107 72.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.8e-27 125.9 104 67.3
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.2e-26 123.2 107 66.4
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.4e-26 121.7 108 65.7
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.4e-26 121.3 107 65.4
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 9.8e-26 120.2 109 66.1
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.5e-23 111.7 107 59.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 6.0e-23 110.9 104 59.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.8e-23 110.5 106 61.3
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.3e-22 109.0 109 57.8
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.3e-22 109.0 106 60.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.3e-22 109.0 107 59.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.0e-22 108.6 106 60.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 6.6e-22 107.5 107 59.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 8.6e-22 107.1 107 61.7
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.6e-22 107.1 105 59.0
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.1e-21 106.7 106 58.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.1e-20 102.4 107 60.7
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.1e-20 102.4 107 55.1
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.1e-20 102.4 107 55.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.8e-20 102.1 105 59.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.7e-20 101.3 104 58.7
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.1e-20 100.5 104 54.8
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.1e-20 100.5 106 60.4
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.4e-19 99.8 106 59.4
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.1e-19 98.6 108 54.6
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 4.0e-19 98.2 110 54.5
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 4.0e-19 98.2 106 59.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.2e-19 97.8 113 53.1
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 5.2e-19 97.8 104 55.8
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 6.8e-19 97.4 108 53.7
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 8.9e-19 97.1 103 56.3
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.2e-18 96.7 105 54.3
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.0e-18 95.9 107 55.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.0e-18 95.9 107 55.1
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.6e-18 95.5 107 55.1
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.6e-18 95.5 108 52.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 54.2
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 55.1
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 4.4e-18 94.7 105 56.2
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 4.4e-18 94.7 95 60.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 4.4e-18 94.7 108 57.4
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.3e-17 93.2 113 51.3
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.9e-17 92.0 111 54.1
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.7e-17 91.7 103 53.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 6.4e-17 90.9 111 53.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.4e-17 90.9 108 54.6
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 6.4e-17 90.9 106 52.8
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 8.3e-17 90.5 106 49.1
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.1e-16 90.1 110 54.5
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 53.3
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.4e-16 89.7 107 52.3
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.9e-16 89.4 103 54.4
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.9e-16 89.4 106 49.1
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.9e-16 89.4 111 55.9
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.4e-16 89.0 105 49.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-16 89.0 106 53.8
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.4e-16 89.0 111 53.2
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.2e-16 88.6 111 52.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.2e-16 88.6 112 53.6
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.1e-16 88.2 107 51.4
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 4.1e-16 88.2 111 52.3
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.1e-16 88.2 107 51.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.1e-16 88.2 107 51.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 4.1e-16 88.2 106 49.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 5.4e-16 87.8 106 54.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.4e-16 87.8 106 52.8
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 5.4e-16 87.8 106 54.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 5.4e-16 87.8 106 54.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.4e-16 87.8 110 52.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 5.4e-16 87.8 107 50.5
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 7.1e-16 87.4 104 51.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 9.2e-16 87.0 111 48.6
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.6e-15 86.3 105 52.4
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-15 85.9 107 50.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.7e-15 85.5 108 51.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.5e-15 85.1 108 52.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.0e-15 84.3 112 50.0
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.0e-15 84.3 109 50.5
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.7e-14 82.8 112 46.4
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.3e-14 82.4 106 48.1
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 3.9e-14 81.6 107 49.5
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 6.6e-14 80.9 94 56.4
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 6.6e-14 80.9 105 49.5
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 8.6e-14 80.5 109 50.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 47.7
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 105 49.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.9e-13 79.3 107 47.7
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 53 71.7
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.9e-13 79.3 110 46.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 3.3e-13 78.6 111 47.7
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 3.3e-13 78.6 111 47.7
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.3e-13 78.6 109 48.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 7.3e-13 77.4 104 48.1
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.6e-12 76.3 108 46.3
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.8e-12 75.5 107 45.8
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.7e-12 74.7 94 50.0
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.7e-12 74.7 109 48.6
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.1e-11 73.6 108 44.4
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 47.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.8e-11 72.8 106 49.1
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 106 49.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.2e-11 71.2 106 48.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.8e-11 70.9 107 44.9
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 8.9e-11 70.5 106 42.5
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 8.9e-11 70.5 107 48.6
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 8.9e-11 70.5 88 53.4
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-10 70.1 107 41.1
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.6e-10 68.9 107 41.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.4e-10 68.6 106 47.2
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.4e-10 68.2 112 45.5
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.4e-10 68.2 110 47.3
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 4.4e-10 68.2 112 42.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.8e-10 67.8 93 48.4
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.8e-10 67.8 40 75.0
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 5.8e-10 67.8 101 51.5
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.9e-10 67.0 41 80.5
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 108 40.7
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.9e-09 64.7 108 44.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 4.9e-09 64.7 117 41.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-08 63.5 96 53.1
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 1.1e-08 63.5 119 37.8
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.4e-08 63.2 107 40.2
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.9e-08 62.8 106 37.7
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.9e-08 62.8 111 38.7
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.9e-08 62.8 111 38.7
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 92 40.2
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.1e-08 61.6 111 42.3
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 5.4e-08 61.2 111 42.3
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 9.2e-08 60.5 108 43.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-07 60.1 109 41.3
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 114 41.2
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.2e-07 60.1 114 40.4
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 80 40.0
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.6e-07 59.7 109 41.3
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.1e-07 59.3 109 41.3
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.7e-07 58.9 104 45.2
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 2.7e-07 58.9 105 38.1
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 4.6e-07 58.2 107 40.2
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 1.0e-06 57.0 89 40.4
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.0e-06 57.0 37 73.0
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.3e-06 56.6 109 42.2
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-06 55.8 111 41.4
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 3.0e-06 55.5 109 38.5
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 3.9e-06 55.1 111 38.7
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 5.1e-06 54.7 37 70.3
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 5.1e-06 54.7 105 42.9
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.1e-06 54.7 107 37.4
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 6.6e-06 54.3 107 35.5
AUR62043482 Chenopodium quinoa HOM05D000040 ORTHO05D000267 8.6e-06 53.9 31 71.0


User provided reference genes

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