Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.3e-51 205.3 106 100.0
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 3.7e-41 171.4 104 82.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 8.3e-41 170.2 104 81.7
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 8.3e-41 170.2 107 83.2
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.4e-40 168.7 107 82.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.1e-40 167.9 104 82.7
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.1e-40 167.9 104 82.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.7e-36 154.5 107 80.4
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.5e-34 149.4 108 76.9
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 4.9e-33 144.4 108 77.8
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.0e-32 140.6 107 72.9
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 7.0e-32 140.6 108 72.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 3.5e-31 138.3 106 71.7
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.5e-31 138.3 109 73.4
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.5e-29 132.1 109 74.3
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 5.6e-29 131.0 109 70.6
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.6e-28 128.3 106 70.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-27 126.3 108 68.5
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 4.0e-27 124.8 107 69.2
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.9e-25 118.6 109 63.3
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.4e-24 115.5 104 63.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 3.2e-24 115.2 110 64.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.1e-24 114.8 108 63.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-23 112.5 108 63.9
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-23 112.1 108 63.9
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.7e-23 112.1 108 63.9
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.7e-23 112.1 108 63.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.5e-23 111.7 109 60.6
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.5e-23 111.7 109 60.6
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.5e-23 111.7 113 59.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 6.0e-23 110.9 109 58.7
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 7.8e-23 110.5 111 59.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.0e-22 108.6 110 62.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 5.0e-22 107.8 108 63.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 8.6e-22 107.1 108 61.1
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 8.6e-22 107.1 110 64.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 8.6e-22 107.1 111 58.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-21 106.7 108 57.4
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.5e-21 106.3 109 59.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.5e-21 106.3 109 59.6
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.5e-21 105.5 103 59.2
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.5e-21 105.5 104 56.7
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.3e-21 104.8 105 59.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 9.5e-21 103.6 109 57.8
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-20 102.8 103 59.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.6e-20 102.8 106 58.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 2.8e-20 102.1 95 65.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 2.8e-20 102.1 116 53.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.6e-20 101.7 115 53.9
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.7e-20 101.3 110 55.5
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 6.2e-20 100.9 111 55.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.1e-20 100.5 109 56.9
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 8.1e-20 100.5 108 54.6
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 8.1e-20 100.5 110 57.3
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.1e-19 100.1 109 56.9
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.4e-19 99.8 109 56.0
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.3e-19 99.0 112 56.2
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.3e-19 99.0 106 54.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.1e-19 98.6 109 54.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.2e-19 97.8 114 57.9
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 6.8e-19 97.4 106 55.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.2e-18 96.7 105 54.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.2e-18 96.7 114 55.3
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.5e-18 96.3 108 57.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.0e-18 95.9 109 56.0
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 3.4e-18 95.1 104 54.8
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.4e-18 94.7 109 56.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.8e-18 94.4 108 55.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 5.8e-18 94.4 104 54.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 7.5e-18 94.0 108 54.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 9.8e-18 93.6 108 55.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 9.8e-18 93.6 108 55.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 9.8e-18 93.6 108 55.6
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.3e-17 93.2 105 55.2
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.3e-17 93.2 109 57.8
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-17 92.4 105 54.3
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 2.2e-17 92.4 105 54.3
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 2.2e-17 92.4 105 54.3
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.2e-17 92.4 108 53.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.9e-17 92.0 106 56.6
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.9e-17 92.0 111 54.1
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.9e-17 92.0 108 53.7
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.7e-17 91.7 113 55.8
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.9e-17 91.3 113 55.8
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 8.3e-17 90.5 107 54.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-16 90.1 105 53.3
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 54.1
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.4e-16 89.7 107 52.3
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.9e-16 89.4 102 54.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 47.8
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 7.1e-16 87.4 106 54.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 7.1e-16 87.4 111 53.2
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 7.1e-16 87.4 109 51.4
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.1e-16 87.4 115 48.7
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 9.2e-16 87.0 106 53.8
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.2e-15 86.7 107 53.3
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.6e-15 86.3 112 50.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.6e-15 86.3 106 53.8
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.6e-15 86.3 112 47.3
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 2.1e-15 85.9 110 50.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.0e-15 84.3 79 55.7
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.0e-15 84.3 109 53.2
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.8e-15 84.0 110 50.9
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 7.8e-15 84.0 111 52.3
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 7.8e-15 84.0 109 49.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-14 83.6 105 50.5
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.7e-14 82.8 110 52.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.7e-14 82.8 110 52.7
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.3e-14 82.4 109 49.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.3e-14 82.4 107 44.9
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.1e-14 81.3 92 51.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 110 51.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.5e-13 79.7 107 47.7
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.9e-13 79.3 109 48.6
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.9e-13 79.3 109 48.6
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 48.6
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.3e-13 78.2 104 47.1
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 7.3e-13 77.4 110 48.2
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 7.3e-13 77.4 122 41.8
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.6e-12 76.3 110 49.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 2.1e-12 75.9 114 49.1
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 3.6e-12 75.1 94 53.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.7e-12 74.7 109 46.8
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.2e-12 74.3 110 49.1
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 8.1e-12 73.9 89 57.3
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 120 44.2
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.4e-11 73.2 109 46.8
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.8e-11 72.8 109 45.0
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.8e-11 72.8 112 45.5
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.3e-11 72.4 114 43.9
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.3e-11 72.4 114 43.9
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.3e-11 72.4 110 47.3
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 3.1e-11 72.0 106 44.3
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 4.0e-11 71.6 82 54.9
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.0e-11 71.6 112 49.1
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 4.0e-11 71.6 102 49.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.5e-10 69.7 111 46.8
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 81 46.9
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 3.4e-10 68.6 119 44.5
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 5.8e-10 67.8 96 55.2
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 7.6e-10 67.4 109 44.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 7.6e-10 67.4 113 46.0
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.9e-10 67.0 39 84.6
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 9.9e-10 67.0 117 41.9
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 9.9e-10 67.0 82 50.0
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 9.9e-10 67.0 108 43.5
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.7e-09 66.2 117 42.7
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 38 78.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.9e-09 64.7 114 48.2
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 8.4e-09 63.9 109 43.1
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 39 82.1
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.4e-08 63.2 107 42.1
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.2e-08 62.0 39 82.1
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 4.1e-08 61.6 40 72.5
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.1e-08 61.6 109 40.4
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.4e-08 61.2 39 76.9
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 7.1e-08 60.8 112 44.6
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 9.2e-08 60.5 108 43.5
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 9.2e-08 60.5 113 41.6
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.6e-07 59.7 108 44.4
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.1e-07 59.3 97 47.4
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 6.0e-07 57.8 109 42.2
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 7.8e-07 57.4 114 38.6
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 109 42.2
Prupe.2G015200 Prunus persica HOM05D004268 ORTHO05D004958 1.0e-06 57.0 119 37.8
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 1.7e-06 56.2 53 56.6
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 2.3e-06 55.8 28 89.3
Pp3c5_690 Physcomitrium patens HOM05D024154 ORTHO05D023530 2.3e-06 55.8 120 35.0
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 3.0e-06 55.5 119 33.6
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 5.1e-06 54.7 109 40.4


User provided reference genes

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