Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 5.7e-68 260.8 129 100.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 6.3e-51 204.1 125 82.4
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 6.8e-37 157.5 92 83.7
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 4.4e-36 154.8 100 78.0
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 7.5e-36 154.1 92 82.6
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.7e-35 152.9 89 82.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.1e-34 148.3 90 78.9
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.2e-28 130.2 98 67.3
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 3.4e-28 128.6 110 59.1
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.4e-28 128.6 110 64.5
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.4e-28 128.6 96 62.5
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.4e-28 128.3 86 75.6
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.4e-28 128.3 110 64.5
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 5.7e-28 127.9 86 75.6
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.7e-28 127.9 90 70.0
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.7e-28 127.9 87 72.4
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 5.7e-28 127.9 99 64.6
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 7.5e-28 127.5 80 78.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-27 126.7 87 72.4
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.7e-27 126.3 89 68.5
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.2e-27 125.9 117 58.1
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.2e-27 125.9 117 58.1
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 2.8e-27 125.6 77 76.6
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 4.9e-27 124.8 77 75.3
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.3e-27 124.4 123 53.7
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-26 123.6 123 53.7
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.4e-26 123.2 128 53.1
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.4e-26 122.5 84 69.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.1e-26 122.1 111 58.6
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 5.4e-26 121.3 103 61.2
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.4e-26 121.3 100 60.0
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.4e-26 121.3 100 60.0
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 7.0e-26 120.9 105 65.7
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-25 120.2 100 60.0
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.0e-25 119.4 94 61.7
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 7.8e-25 117.5 90 65.6
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.0e-24 117.1 102 58.8
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.3e-24 116.7 92 59.8
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.3e-24 115.9 75 74.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.9e-24 115.5 82 64.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.8e-24 115.2 87 65.5
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 5.0e-24 114.8 83 63.9
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 5.0e-24 114.8 91 64.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 8.6e-24 114.0 74 67.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-22 109.8 86 69.8
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.6e-22 109.8 88 59.1
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.1e-22 109.4 89 57.3
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 2.8e-22 109.0 72 68.1
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.8e-22 109.0 80 60.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.6e-22 108.6 96 52.1
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 4.7e-22 108.2 83 60.2
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 6.1e-22 107.8 76 67.1
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 8.0e-22 107.5 78 60.3
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.0e-22 107.5 92 54.3
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.4e-21 106.7 82 64.6
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.0e-21 105.5 86 57.0
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 6.8e-21 104.4 75 64.0
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.2e-20 103.6 84 61.9
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-20 103.2 86 57.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.0e-20 102.8 88 54.5
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 2.6e-20 102.4 75 58.7
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 5.7e-20 101.3 74 58.1
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 7.5e-20 100.9 74 59.5
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 9.8e-20 100.5 78 57.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.3e-19 100.1 76 60.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.3e-19 100.1 71 62.0
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.3e-19 100.1 85 54.1
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.7e-19 99.8 68 64.7
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 1.7e-19 99.8 89 51.7
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.2e-19 99.4 70 67.1
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.2e-19 99.4 87 55.2
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 2.2e-19 99.4 71 63.4
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-19 99.0 71 60.6
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.9e-19 99.0 89 52.8
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.9e-19 99.0 86 55.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.9e-19 99.0 89 53.9
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 2.9e-19 99.0 89 50.6
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 2.9e-19 99.0 79 55.7
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.7e-19 98.6 85 56.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 3.7e-19 98.6 82 56.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 4.9e-19 98.2 70 64.3
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.1e-18 97.1 85 56.5
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.1e-18 97.1 71 62.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.4e-18 96.7 71 59.2
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.4e-18 96.7 71 59.2
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.4e-18 96.7 71 59.2
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.4e-18 96.7 83 53.0
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.4e-18 96.7 71 67.6
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.8e-18 96.3 96 44.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.8e-18 96.3 79 51.9
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.8e-18 96.3 73 61.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.4e-18 95.9 77 50.6
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 2.4e-18 95.9 87 49.4
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 2.4e-18 95.9 87 49.4
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.4e-18 95.9 91 51.6
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.2e-18 95.5 93 51.6
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 3.2e-18 95.5 92 50.0
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 4.1e-18 95.1 83 48.2
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.1e-18 95.1 75 57.3
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.1e-18 95.1 85 54.1
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 4.1e-18 95.1 72 52.8
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 7.0e-18 94.4 89 50.6
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 9.2e-18 94.0 78 55.1
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-17 93.6 85 54.1
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.6e-17 93.2 94 44.7
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 2.0e-17 92.8 68 58.8
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.0e-17 92.8 83 48.2
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.0e-17 92.8 68 58.8
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.7e-17 92.4 83 47.0
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.7e-17 92.4 74 52.7
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 4.6e-17 91.7 68 60.3
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 1.0e-16 90.5 90 43.3
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.0e-16 90.5 82 51.2
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 4.3e-15 85.1 80 51.2
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.6e-14 83.2 67 55.2
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.8e-14 82.4 74 52.7
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 3.6e-14 82.0 61 63.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.1e-13 80.5 67 53.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.1e-13 80.5 74 50.0
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 3.7e-11 72.0 53 66.0
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.4e-11 71.2 103 44.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.4e-10 69.3 57 54.4
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.2e-10 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.0e-08 63.9 58 53.4
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 6.6e-08 61.2 88 39.8
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.5e-07 60.1 61 50.8
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 2.5e-07 59.3 66 50.0
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 9.5e-07 57.4 86 40.7
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 9.5e-07 57.4 91 34.1
Lj4g0012534 Lotus japonicus HOM05D009285 ORTHO05D009865 6.2e-06 54.7 92 33.7
Nn1g07498 Nelumbo nucifera HOM05D001797 ORTHO05D001650 6.2e-06 54.7 96 29.2


User provided reference genes

Program Settings