Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.1e-72 276.9 192 100.0
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.2e-53 213.8 118 85.6
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.1e-51 207.2 117 81.2
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.1e-48 197.2 110 80.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 3.5e-29 132.5 195 46.2
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 3.6e-26 122.5 117 53.8
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 8.0e-26 121.3 101 60.4
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 8.0e-26 121.3 87 65.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 3.0e-25 119.4 87 63.2
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.2e-24 117.5 99 58.6
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.2e-24 117.5 86 64.0
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 2.6e-24 116.3 91 60.4
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 3.4e-24 115.9 87 62.1
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.4e-24 115.9 86 62.8
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.4e-24 115.9 86 62.8
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.4e-24 115.9 100 57.0
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.4e-24 115.9 100 57.0
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 4.4e-24 115.5 86 62.8
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 5.7e-24 115.2 86 62.8
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 5.7e-24 115.2 86 62.8
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 9.8e-24 114.4 86 64.0
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.7e-23 113.6 86 64.0
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.7e-23 113.6 86 64.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.7e-23 113.6 84 63.1
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.7e-23 113.6 86 62.8
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.2e-23 113.2 101 56.4
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.8e-23 112.8 101 58.4
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.8e-23 112.8 86 61.6
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.7e-23 112.5 116 51.7
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 4.8e-23 112.1 86 61.6
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 4.8e-23 112.1 109 53.2
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 6.3e-23 111.7 86 61.6
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 8.3e-23 111.3 119 50.4
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.1e-22 110.9 100 57.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.4e-22 110.5 86 59.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.4e-22 110.5 82 62.2
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.8e-22 110.2 86 60.5
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.8e-22 110.2 87 58.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.8e-22 110.2 87 56.3
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.4e-22 109.8 86 59.3
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 3.1e-22 109.4 87 62.1
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 3.1e-22 109.4 106 56.6
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 3.1e-22 109.4 87 56.3
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 4.1e-22 109.0 106 56.6
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 4.1e-22 109.0 87 62.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 4.1e-22 109.0 86 62.8
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 4.1e-22 109.0 100 57.0
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 5.4e-22 108.6 86 59.3
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 5.4e-22 108.6 87 62.1
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.0e-22 108.2 100 56.0
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.0e-22 108.2 100 56.0
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.0e-22 108.2 100 56.0
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 9.1e-22 107.8 122 52.5
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 9.1e-22 107.8 87 60.9
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.2e-21 107.5 86 57.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.2e-21 107.5 87 57.5
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.2e-21 107.5 87 57.5
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.6e-21 107.1 85 60.0
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.6e-21 107.1 102 52.9
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.6e-21 107.1 108 50.0
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.6e-21 107.1 86 59.3
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.0e-21 106.7 100 56.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.0e-21 106.7 100 56.0
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.0e-21 106.7 100 56.0
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 2.7e-21 106.3 147 43.5
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.7e-21 106.3 86 58.1
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.7e-21 106.3 86 58.1
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.7e-21 106.3 100 56.0
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 2.7e-21 106.3 87 57.5
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.7e-21 106.3 87 57.5
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 2.7e-21 106.3 87 57.5
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 3.5e-21 105.9 86 58.1
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 4.5e-21 105.5 86 59.3
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 4.5e-21 105.5 114 47.4
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 4.5e-21 105.5 87 60.9
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 4.5e-21 105.5 86 57.0
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 5.9e-21 105.1 87 55.2
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 7.7e-21 104.8 87 60.9
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 7.7e-21 104.8 87 56.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-20 104.4 87 59.8
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-20 104.4 87 59.8
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.0e-20 104.4 87 59.8
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.0e-20 104.4 87 59.8
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.0e-20 104.4 86 60.5
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.3e-20 104.0 86 54.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.3e-20 104.0 86 59.3
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.7e-20 103.6 100 56.0
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 2.3e-20 103.2 84 57.1
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 2.3e-20 103.2 87 59.8
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 2.3e-20 103.2 86 58.1
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.3e-20 103.2 86 58.1
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.1e-19 100.9 87 52.9
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.5e-19 100.5 84 56.0
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-19 100.1 107 49.5
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-19 100.1 107 49.5
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 1.9e-19 100.1 107 49.5
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.2e-18 97.4 87 54.0
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.2e-18 97.4 85 55.3
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 1.6e-18 97.1 87 52.9
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.0e-17 94.4 87 51.7
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 4.0e-17 92.4 119 42.9
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.1e-14 84.3 70 51.4
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-14 84.0 117 45.3
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.2e-13 80.9 132 38.6
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 3.5e-13 79.3 135 37.0
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.9e-12 76.3 58 62.1
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.9e-12 76.3 58 62.1
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.8e-12 75.9 63 52.4
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.3e-11 72.8 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.2e-10 70.9 77 45.5
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.1e-10 70.1 69 53.6
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-09 67.4 56 51.8
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 3.1e-09 66.2 79 41.8
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.0e-08 63.5 83 41.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.0e-08 63.5 83 41.0
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 2.4e-06 56.6 107 32.7


User provided reference genes

Program Settings