Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 3.5e-168 595.1 356 100.0
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.9e-135 485.3 360 80.0
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 8.4e-122 441.0 366 74.6
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 4.3e-110 402.1 367 75.5
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 5.1e-103 378.6 359 64.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 7.4e-102 374.8 363 65.3
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 6.1e-96 355.1 356 66.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.7e-93 347.1 358 63.1
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.2e-93 346.7 362 66.9
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.0e-91 340.1 361 58.4
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.7e-91 339.7 362 61.9
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.5e-91 339.3 366 57.4
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.5e-91 339.3 360 57.8
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 3.2e-89 332.8 373 55.2
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.2e-89 332.4 356 59.3
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 6.8e-87 325.1 355 55.5
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.0e-86 323.6 366 58.2
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.3e-85 320.9 358 58.4
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 8.3e-85 318.2 367 59.4
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.1e-84 317.8 356 59.0
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 1.4e-84 317.4 358 56.4
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 5.4e-84 315.5 359 57.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.7e-83 313.2 356 59.3
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.5e-83 312.8 360 55.6
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 5.9e-83 312.0 353 59.2
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.2e-82 310.1 365 54.5
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.2e-82 310.1 363 56.7
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 8.5e-82 308.1 358 55.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.5e-81 307.4 363 53.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.9e-81 307.0 363 58.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.2e-80 304.3 387 52.7
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 3.6e-80 302.8 364 57.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.6e-80 302.8 364 55.2
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 4.7e-80 302.4 384 56.5
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 8.0e-80 301.6 370 58.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 8.0e-80 301.6 358 55.9
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.4e-79 300.8 367 62.4
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 2.3e-79 300.1 373 58.2
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.5e-78 297.4 348 57.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-78 297.4 369 55.6
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.6e-78 296.6 366 57.1
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.7e-77 293.9 369 55.0
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 2.2e-77 293.5 353 54.7
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.7e-77 292.7 358 53.4
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 6.3e-77 292.0 370 56.8
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.4e-76 290.0 358 51.1
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 5.4e-76 288.9 356 56.2
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 5.4e-76 288.9 357 61.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.2e-76 288.1 358 51.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.0e-75 287.0 365 53.2
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.0e-75 287.0 359 53.5
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 7.3e-73 278.5 357 48.7
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 9.5e-73 278.1 376 48.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.4e-71 274.2 366 54.4
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 7.5e-70 268.5 352 47.7
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 7.0e-68 261.9 364 49.2
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 7.0e-68 261.9 364 49.2
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 7.0e-68 261.9 364 49.2
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.0e-66 258.1 367 49.0
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-66 256.9 356 46.1
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.3e-66 256.9 357 49.6
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.6e-66 255.4 360 45.6
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.5e-65 253.4 374 52.9
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 5.6e-65 252.3 362 48.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.6e-64 250.8 360 45.0
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 4.7e-64 249.2 373 51.7
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.8e-63 247.3 373 44.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 5.2e-63 245.7 285 50.5
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.0e-62 243.8 357 45.9
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.6e-62 243.4 381 44.6
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 7.5e-62 241.9 350 49.1
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 9.8e-62 241.5 364 49.5
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-61 240.0 363 43.3
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.9e-60 237.3 358 48.0
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.4e-60 236.9 351 45.6
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 2.4e-60 236.9 356 46.6
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.2e-60 236.5 358 46.6
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 3.2e-60 236.5 358 49.7
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.6e-59 234.2 363 47.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.6e-59 234.2 358 46.4
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.5e-59 233.0 363 46.0
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 6.0e-59 232.3 362 47.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 7.8e-59 231.9 358 49.7
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.0e-58 229.9 355 48.2
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-57 227.6 358 50.0
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.5e-57 227.6 359 43.7
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.3e-57 226.1 366 44.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 7.3e-57 225.3 354 42.7
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.2e-56 224.6 297 59.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.2e-56 224.6 270 50.4
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 8.1e-56 221.9 358 44.1
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 8.1e-56 221.9 361 46.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.4e-55 221.1 363 48.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-55 221.1 312 46.5
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.8e-55 220.7 363 47.1
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 4.0e-55 219.5 362 46.1
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.2e-55 219.2 354 48.9
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 6.8e-55 218.8 335 47.2
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-54 218.0 361 42.9
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.0e-54 217.2 365 46.6
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-54 216.9 368 44.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.6e-54 216.9 361 41.0
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.4e-54 216.1 362 47.8
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 4.4e-54 216.1 370 40.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 7.5e-54 215.3 369 47.2
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.3e-53 214.5 362 46.4
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.3e-53 214.5 362 47.2
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.7e-53 214.2 368 47.6
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 3.7e-53 213.0 355 40.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 4.9e-53 212.6 355 40.3
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-52 211.1 352 44.9
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-52 211.1 352 40.3
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.9e-52 210.7 353 44.5
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 4.1e-52 209.5 352 40.1
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 4.1e-52 209.5 366 40.4
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 9.2e-52 208.4 301 51.2
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.2e-51 208.0 355 41.4
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.6e-51 207.6 373 38.9
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.6e-51 206.1 376 43.1
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-49 200.7 361 44.3
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-49 200.7 361 44.3
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-49 199.9 374 47.1
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.3e-49 199.5 353 44.8
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-48 198.0 377 45.1
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.6e-48 197.6 357 44.0
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 8.1e-48 195.3 356 43.3
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-47 194.9 376 45.2
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-47 194.9 376 45.2
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-47 194.9 376 45.2
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.1e-47 193.4 373 41.3
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.0e-47 193.0 361 44.3
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 5.8e-46 189.1 333 47.4
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 5.8e-46 189.1 363 41.3
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-44 183.7 369 40.9
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-44 183.7 369 40.9
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-44 183.7 369 40.9
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.2e-44 183.3 359 40.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 9.2e-44 181.8 375 41.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.3e-42 177.9 233 53.2
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.5e-41 173.7 373 44.0
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.2e-40 169.1 312 37.8
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.1e-39 168.3 364 36.8
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-39 166.4 360 37.8
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 5.2e-39 166.0 251 41.0
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.2e-37 160.6 363 35.5
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.2e-36 156.8 368 33.7
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 3.2e-36 156.8 204 45.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-35 152.1 360 35.3
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.0e-34 150.2 357 31.9
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 8.7e-34 148.7 328 43.0
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 3.6e-32 143.3 379 34.0
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 4.8e-32 142.9 360 34.4
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 5.3e-31 139.4 421 29.7
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.3e-31 139.4 385 33.8
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-30 138.3 436 30.0
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.2e-30 138.3 373 36.2
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-30 137.1 360 33.3
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 5.8e-30 136.0 221 38.5
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 5.8e-30 136.0 358 34.4
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 6.0e-27 125.9 269 37.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 7.9e-27 125.6 278 35.3
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.9e-21 106.3 350 31.1
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 5.5e-20 102.8 359 36.5
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 2.3e-18 97.4 182 38.5
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.5e-17 94.7 367 39.0
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.3e-16 91.7 207 31.4
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.8e-16 89.7 359 32.6
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 5.8e-14 82.8 202 35.1
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-13 81.6 113 47.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.5e-09 67.4 303 30.0
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.3e-09 67.0 170 30.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-09 67.0 100 43.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 9.6e-09 65.5 335 27.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.8e-08 63.9 333 27.9
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-06 57.4 57 50.9
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.6e-06 57.4 159 30.2


User provided reference genes

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