Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 3.2e-211 738.4 451 100.0
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.1e-163 580.5 448 75.9
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 5.6e-155 551.6 444 70.0
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.1e-149 533.1 450 70.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.3e-148 529.6 445 70.8
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.2e-141 507.3 442 67.4
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 7.9e-141 504.6 442 66.7
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.0e-140 504.2 442 66.5
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-139 500.7 442 67.2
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 4.3e-139 498.8 461 65.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 4.5e-136 488.8 462 65.4
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 2.9e-135 486.1 443 67.5
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.6e-133 480.3 459 65.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.6e-133 480.3 441 66.4
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.1e-133 479.9 441 66.4
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.1e-133 479.9 395 66.8
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 2.7e-133 479.6 413 63.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 4.6e-133 478.8 458 64.6
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 6.0e-133 478.4 441 67.1
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 6.0e-133 478.4 394 66.5
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 7.9e-133 478.0 445 60.0
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 7.9e-133 478.0 438 62.6
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.8e-132 476.9 428 67.8
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 3.0e-132 476.1 459 63.4
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 5.1e-132 475.3 443 59.6
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 6.7e-132 474.9 454 60.1
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 6.7e-132 474.9 459 63.4
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.5e-131 473.8 460 58.5
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.5e-131 473.8 436 61.7
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.9e-131 473.4 460 63.9
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.5e-131 473.0 450 60.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 3.3e-131 472.6 395 67.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 3.3e-131 472.6 349 71.3
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 9.7e-131 471.1 457 62.4
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.3e-130 470.7 393 66.4
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-130 470.7 433 62.4
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.6e-130 470.3 438 65.8
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.2e-130 469.9 454 60.1
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.2e-130 469.9 459 64.5
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 3.7e-130 469.2 433 62.1
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.8e-130 468.8 452 60.0
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 4.8e-130 468.8 452 60.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 6.3e-130 468.4 417 62.1
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 6.3e-130 468.4 437 66.1
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 8.2e-130 468.0 443 60.3
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.1e-129 467.6 442 59.3
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 2.4e-129 466.5 446 59.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.1e-129 466.1 443 63.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 5.3e-129 465.3 441 57.8
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 5.3e-129 465.3 441 60.1
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 5.3e-129 465.3 444 60.8
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 6.9e-129 464.9 451 58.5
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 6.9e-129 464.9 431 62.4
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 6.9e-129 464.9 443 58.7
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 9.0e-129 464.5 441 58.3
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.2e-128 464.2 455 58.9
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.2e-128 464.2 454 59.3
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.5e-128 463.8 438 65.5
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 2.0e-128 463.4 460 57.0
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.6e-128 463.0 438 65.5
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 3.4e-128 462.6 446 58.3
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 3.4e-128 462.6 467 57.2
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.5e-128 462.2 454 58.4
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.5e-128 462.2 452 59.3
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 5.9e-128 461.8 443 63.4
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 5.9e-128 461.8 458 57.6
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 7.7e-128 461.5 457 57.5
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 7.7e-128 461.5 417 64.0
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 7.7e-128 461.5 460 62.6
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 7.7e-128 461.5 446 58.3
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 7.7e-128 461.5 446 60.1
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.3e-127 460.7 395 63.3
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.3e-127 460.7 395 63.3
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.7e-127 460.3 437 65.4
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.7e-127 460.3 437 65.4
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.9e-127 459.5 417 62.8
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.8e-127 459.1 482 58.9
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.8e-127 459.1 417 62.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 5.0e-127 458.8 457 56.7
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 5.0e-127 458.8 457 56.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 5.0e-127 458.8 462 59.1
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.5e-127 458.4 393 61.6
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-126 457.2 455 57.4
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-126 456.8 457 56.5
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 4.2e-126 455.7 348 69.3
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.5e-126 455.3 442 60.0
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 9.4e-126 454.5 459 56.9
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 9.4e-126 454.5 394 61.2
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.7e-125 453.0 395 63.8
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.6e-125 452.2 438 58.4
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 4.6e-125 452.2 429 63.2
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 7.9e-125 451.4 349 67.9
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 7.9e-125 451.4 397 64.7
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.1e-123 447.6 444 57.4
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.5e-123 447.2 348 67.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 7.4e-123 444.9 395 59.7
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.4e-121 439.9 389 67.4
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.0e-120 436.8 344 65.7
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-119 434.1 467 59.3
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-119 434.1 467 59.3
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 1.8e-116 423.7 346 64.2
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 6.7e-116 421.8 396 59.3
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 5.7e-115 418.7 346 63.0
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.3e-114 417.5 450 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 3.7e-114 416.0 389 57.8
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.2e-112 411.0 393 56.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.0e-111 405.6 394 56.6
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.1e-110 404.4 396 56.8
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 5.5e-110 402.1 394 62.7
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.1e-109 400.2 388 54.9
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 2.7e-109 399.8 389 54.8
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.7e-109 399.8 405 53.6
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 2.3e-108 396.7 477 48.2
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.7e-106 389.4 395 58.5
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.0e-103 381.3 313 63.9
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.3e-103 380.9 346 57.2
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 5.5e-102 375.6 348 56.3
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 9.4e-102 374.8 348 56.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.6e-101 374.0 347 57.1
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 4.7e-101 372.5 348 56.0
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 8.0e-101 371.7 355 54.9
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-99 367.9 346 56.1
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.2e-99 367.9 346 56.1
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.2e-99 367.9 346 56.1
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.5e-99 367.5 352 56.2
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.1e-97 361.3 348 54.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.4e-97 360.9 348 54.9
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 8.8e-92 341.7 330 55.8
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 7.5e-91 338.6 339 54.9
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.2e-86 322.8 396 52.3
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.8e-84 317.4 314 62.1
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.4e-83 313.2 237 69.2
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.4e-83 312.8 314 54.5
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 8.6e-79 298.5 348 44.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 8.6e-79 298.5 351 45.9
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 4.3e-78 296.2 341 46.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.4e-76 291.2 235 70.6
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 2.0e-75 287.3 189 77.8
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.8e-68 264.2 357 47.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.4e-67 260.0 170 78.2
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.7e-63 247.7 254 54.7
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.7e-56 223.8 120 86.7
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.3e-55 221.5 137 75.9
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.4e-52 210.7 264 48.1
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 7.3e-46 189.1 189 54.5
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 7.3e-46 189.1 101 85.1
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.6e-45 186.8 282 43.3
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 6.9e-44 182.6 189 53.4
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 2.0e-43 181.0 101 81.2
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 3.9e-39 166.8 150 57.3
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 3.9e-39 166.8 100 77.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 4.0e-36 156.8 77 89.6
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 1.2e-35 155.2 236 47.0
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 2.0e-35 154.5 185 47.0
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 9.9e-35 152.1 185 47.6
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.4e-33 146.4 76 82.9
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 7.1e-33 146.0 178 55.6
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-31 141.4 82 85.4
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 8.7e-31 139.0 116 60.3
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 2.1e-29 134.4 293 32.4
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 6.2e-29 132.9 72 87.5
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 6.9e-28 129.4 72 90.3
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.5e-27 126.7 78 79.5
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 6.5e-26 122.9 340 28.8
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.0e-23 114.0 74 77.0
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 2.1e-21 107.8 123 56.9
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 2.1e-21 107.8 123 56.9
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 2.6e-19 100.9 94 56.4
Psat5g087760 Pisum sativum HOM05D003910 ORTHO05D004622 1.8e-15 88.2 65 73.8
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 6.7e-15 86.3 40 100.0
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 3.7e-13 80.5 49 81.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 5.3e-12 76.6 50 70.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.0e-11 74.7 99 38.4
Psat1g013080 Pisum sativum HOM05D003910 ORTHO05D323649 7.7e-11 72.8 65 64.6
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.7e-10 71.6 70 54.3
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 5.5e-09 66.6 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 9.4e-09 65.9 59 61.0


User provided reference genes

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