Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35128 Trifolium pratense HOM05D049692 ORTHO05D411059 2.2e-63 245.4 116 100.0
TPR.G22063 Trifolium pratense HOM05D049692 ORTHO05D413420 1.6e-24 116.3 77 72.7
Medtr1g053470 Medicago truncatula HOM05D000768 ORTHO05D000665 5.0e-15 84.7 95 48.4
Lsat_1_v5_gn_7_37761 Lactuca sativa HOM05D000768 ORTHO05D000665 4.7e-13 78.2 87 48.3
Medtr1g083810 Medicago truncatula HOM05D000768 ORTHO05D000665 6.1e-13 77.8 88 52.3
arahy.Tifrunner.gnm1.ann1.S4FFID Arachis hypogaea HOM05D000768 ORTHO05D000665 1.8e-12 76.3 88 51.1
Psat6g152400 Pisum sativum HOM05D000768 ORTHO05D000665 3.0e-12 75.5 88 48.9
DCAR_023329 Daucus carota HOM05D000768 ORTHO05D000665 4.0e-12 75.1 88 45.5
arahy.Tifrunner.gnm1.ann1.RZWE33 Arachis hypogaea HOM05D000768 ORTHO05D000665 5.2e-12 74.7 105 42.9
Hma1.2p1_0472F.1_g159840 Hydrangea macrophylla HOM05D000768 ORTHO05D000665 6.8e-12 74.3 88 48.9
Manes.09G175000 Manihot esculenta HOM05D000768 ORTHO05D000665 6.8e-12 74.3 88 47.7
Lsat_1_v5_gn_7_75721 Lactuca sativa HOM05D000768 ORTHO05D000665 1.2e-11 73.6 88 47.7
Lj5g0011654 Lotus japonicus HOM05D000768 ORTHO05D000665 1.5e-11 73.2 88 46.6
Manes.01G224600 Manihot esculenta HOM05D000768 ORTHO05D000665 2.0e-11 72.8 88 44.3
Sabra13G0009400 Salix brachista HOM05D000768 ORTHO05D000665 2.0e-11 72.8 88 45.5
Dinv30863 Davidia involucrata HOM05D000768 ORTHO05D000665 3.4e-11 72.0 88 46.6
Gohir.A11G276566 Gossypium hirsutum HOM05D000768 ORTHO05D009513 3.4e-11 72.0 86 47.7
arahy.Tifrunner.gnm1.ann1.I48YC4 Arachis hypogaea HOM05D000768 ORTHO05D000665 4.4e-11 71.6 105 41.0
Eucgr.B02080 Eucalyptus grandis HOM05D000768 ORTHO05D000665 4.4e-11 71.6 88 46.6
Cc03_g01180 Coffea canephora HOM05D000768 ORTHO05D000665 7.5e-11 70.9 88 45.5
Cc03_g01190 Coffea canephora HOM05D000768 ORTHO05D000665 7.5e-11 70.9 88 45.5
Rhsim11G0093100 Rhododendron simsii HOM05D000768 ORTHO05D000665 7.5e-11 70.9 88 45.5
TPR.G1639 Trifolium pratense HOM05D000768 ORTHO05D000665 7.5e-11 70.9 88 48.9
AL8G22920 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 1.3e-10 70.1 106 40.6
CSS0004462 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 1.3e-10 70.1 88 44.3
Lsat_1_v5_gn_1_114900 Lactuca sativa HOM05D000768 ORTHO05D000665 1.3e-10 70.1 88 46.6
Os01g0343200 Oryza sativa ssp. japonica HOM05D000768 ORTHO05D000665 1.3e-10 70.1 97 40.2
Thecc.05G320100 Theobroma cacao HOM05D000768 ORTHO05D000665 1.3e-10 70.1 86 45.3
Oeu035483.1 Olea europaea HOM05D000768 ORTHO05D000665 2.2e-10 69.3 88 46.6
Sabra08G0149700 Salix brachista HOM05D000768 ORTHO05D000665 2.2e-10 69.3 88 45.5
TWI56G0035 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 2.2e-10 69.3 88 45.5
Eucgr.H03281 Eucalyptus grandis HOM05D000768 ORTHO05D000665 2.8e-10 68.9 88 47.7
TWI12G0178 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 3.7e-10 68.6 88 44.3
Peaxi162Scf00073g00231 Petunia axillaris HOM05D000768 ORTHO05D000665 6.3e-10 67.8 86 45.3
vmacro19718 Vaccinium macrocarpon HOM05D000768 ORTHO05D000665 6.3e-10 67.8 88 45.5
AUR62006766 Chenopodium quinoa HOM05D000768 ORTHO05D000665 8.3e-10 67.4 110 41.8
TAR633G0210 Trochodendron aralioides HOM05D000768 ORTHO05D000665 8.3e-10 67.4 95 44.2
Hma1.2p1_1302F.1_g274380 Hydrangea macrophylla HOM05D000768 ORTHO05D000665 1.1e-09 67.0 88 44.3
TWI36G1137 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 1.1e-09 67.0 88 44.3
TAR365G0737 Trochodendron aralioides HOM05D000768 ORTHO05D000665 1.1e-09 67.0 88 45.5
vmacro01542 Vaccinium macrocarpon HOM05D000768 ORTHO05D000665 1.1e-09 67.0 88 44.3
Hma1.2p1_0013F.1_g008940 Hydrangea macrophylla HOM05D000768 ORTHO05D000665 1.4e-09 66.6 88 45.5
Lsat_1_v5_gn_6_107681 Lactuca sativa HOM05D000768 ORTHO05D000665 1.4e-09 66.6 88 45.5
CDE11G0180 Ceratophyllum demersum HOM05D000768 ORTHO05D000665 1.8e-09 66.2 88 45.5
Haze_04040 Corylus avellana HOM05D000768 ORTHO05D000665 1.8e-09 66.2 88 46.6
Glyma.19G229800 Glycine max HOM05D000768 ORTHO05D000665 2.4e-09 65.9 88 45.5
TAR636G1920 Trochodendron aralioides HOM05D000768 ORTHO05D000665 2.4e-09 65.9 88 43.2
Atru.chr10.860_Atru.chr10.861 Acer truncatum HOM05D000768 ORTHO05D000665 3.1e-09 65.5 95 43.2
EL10Ac7g17616 Beta vulgaris HOM05D000768 ORTHO05D000665 3.1e-09 65.5 88 44.3
Glyma.03G230650 Glycine max HOM05D000768 ORTHO05D000665 3.1e-09 65.5 86 43.0
Prupe.1G125900 Prunus persica HOM05D000768 ORTHO05D000665 3.1e-09 65.5 88 39.8
CDE05G2842 Ceratophyllum demersum HOM05D000768 ORTHO05D000665 4.1e-09 65.1 82 47.6
RcHm_v2.0_Chr3g0456721 Rosa chinensis HOM05D000768 ORTHO05D000665 4.1e-09 65.1 88 43.2
Haze_05000 Corylus avellana HOM05D000768 ORTHO05D000665 5.4e-09 64.7 99 41.4
Glyma.03G232800 Glycine max HOM05D000768 ORTHO05D000665 5.4e-09 64.7 88 44.3
Manes.01G224900 Manihot esculenta HOM05D000768 ORTHO05D000665 5.4e-09 64.7 88 42.0
Medtr4g013265 Medicago truncatula HOM05D000768 ORTHO05D000665 5.4e-09 64.7 96 38.5
Potri.002G199600 Populus trichocarpa HOM05D000768 ORTHO05D000665 5.4e-09 64.7 88 44.3
Aqoxy2G02821 Aquilegia oxysepala HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 43.2
Cfa006720 Carpinus fangiana HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 45.5
CDE02G0026 Ceratophyllum demersum HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 42.0
Gohir.A11G276632 Gossypium hirsutum HOM05D000768 ORTHO05D000665 7.0e-09 64.3 86 44.2
Gohir.D08G222100 Gossypium hirsutum HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 46.6
Gorai.004G235800 Gossypium raimondii HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 46.6
PSO170G3835 Papaver somniferum HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 40.9
PSO357G0609 Papaver somniferum HOM05D000768 ORTHO05D000665 7.0e-09 64.3 88 40.9
Aa31LG7G350 Aethionema arabicum HOM05D000768 ORTHO05D000665 1.2e-08 63.5 86 40.7
Duzib177G0152 Durio zibethinus HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 44.3
Gohir.A08G204900 Gossypium hirsutum HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 45.5
Oeu053692.1 Olea europaea HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 42.0
Potri.014G124200 Populus trichocarpa HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 43.2
Solyc01g100720.3 Solanum lycopersicum HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 44.3
Sopen01g044220 Solanum pennellii HOM05D000768 ORTHO05D000665 1.6e-08 63.2 88 44.3
CAN.G1076.34 Capsicum annuum HOM05D000768 ORTHO05D000665 2.0e-08 62.8 88 43.2
COL.COLO4_23275 Corchorus olitorius HOM05D000768 ORTHO05D000665 2.0e-08 62.8 86 43.0
Gohir.A12G127200 Gossypium hirsutum HOM05D000768 ORTHO05D000665 2.0e-08 62.8 86 43.0
Nitab4.5_0004317g0030 Nicotiana tabacum HOM05D000768 ORTHO05D000665 2.0e-08 62.8 88 44.3
Sed0023208 Sechium edule HOM05D000768 ORTHO05D000665 2.0e-08 62.8 86 44.2
CsaV3_6G022590 Cucumis sativus L. HOM05D000768 ORTHO05D000665 2.7e-08 62.4 88 42.0
Lj5A326T52 Lonicera japonica HOM05D000768 ORTHO05D000665 2.7e-08 62.4 88 44.3
Sabra14G0092300 Salix brachista HOM05D000768 ORTHO05D000665 2.7e-08 62.4 88 40.9
Sed0005699 Sechium edule HOM05D000768 ORTHO05D000665 2.7e-08 62.4 88 43.2
Aa31LG7G2400 Aethionema arabicum HOM05D000768 ORTHO05D000665 3.5e-08 62.0 86 41.9
Gohir.A08G118400 Gossypium hirsutum HOM05D000768 ORTHO05D000665 3.5e-08 62.0 86 43.0
Gohir.D08G139280 Gossypium hirsutum HOM05D000768 ORTHO05D000665 3.5e-08 62.0 86 43.0
Gorai.004G143100 Gossypium raimondii HOM05D000768 ORTHO05D000665 3.5e-08 62.0 86 43.0
arahy.Tifrunner.gnm1.ann1.4MM1AD Arachis hypogaea HOM05D000768 ORTHO05D000665 4.5e-08 61.6 74 45.9
MSTRG.27955 Avicennia marina HOM05D000768 ORTHO05D000665 4.5e-08 61.6 88 42.0
CANSAT54G2553 Cannabis sativa HOM05D000768 ORTHO05D000665 5.9e-08 61.2 86 45.3
Lj9A206T27 Lonicera japonica HOM05D000768 ORTHO05D000665 5.9e-08 61.2 88 38.6
Actinidia25832 Actinidia chinensis HOM05D000768 ORTHO05D000665 7.7e-08 60.8 88 40.9
PSO170G5366 Papaver somniferum HOM05D000768 ORTHO05D000665 7.7e-08 60.8 85 40.0
Dinv24476 Davidia involucrata HOM05D000768 ORTHO05D000665 1.0e-07 60.5 88 42.0
PSO170G5492 Papaver somniferum HOM05D000768 ORTHO05D000665 1.0e-07 60.5 88 42.0
PSO302G0090 Papaver somniferum HOM05D000768 ORTHO05D000665 1.0e-07 60.5 88 42.0
PGSC0003DMG400002759 Solanum tuberosum HOM05D000768 ORTHO05D000665 1.0e-07 60.5 88 43.2
Carub.0001s0861 Capsella rubella HOM05D000768 ORTHO05D000665 1.3e-07 60.1 88 42.0
Duzib128G1800 Durio zibethinus HOM05D000768 ORTHO05D000665 1.3e-07 60.1 88 44.3
QL12p028850 Quercus lobata HOM05D000768 ORTHO05D000665 1.3e-07 60.1 88 42.0
AL1G19760 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 1.7e-07 59.7 88 43.2
Sp1g07880 Schrenkiella parvula HOM05D000768 ORTHO05D000665 1.7e-07 59.7 88 43.2
TWI56G1210 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 1.7e-07 59.7 88 44.3
AT1G09270 Arabidopsis thaliana HOM05D000768 ORTHO05D000665 2.3e-07 59.3 88 43.2
C08p12580 Brassica napus HOM05D000768 ORTHO05D000665 2.3e-07 59.3 88 42.0
AUR62000420 Chenopodium quinoa HOM05D000768 ORTHO05D000665 2.3e-07 59.3 88 43.2
PSO170G3898 Papaver somniferum HOM05D000768 ORTHO05D000665 2.3e-07 59.3 94 39.4
Aa31LG1G5860 Aethionema arabicum HOM05D000768 ORTHO05D000665 2.9e-07 58.9 88 42.0
unitig_52.g16813 Utricularia gibba HOM05D000768 ORTHO05D000665 2.9e-07 58.9 88 36.4
Aa31LG5G1830 Aethionema arabicum HOM05D000768 ORTHO05D014349 3.8e-07 58.5 95 36.8
BcaC07g38488 Brassica carinata HOM05D000768 ORTHO05D000665 3.8e-07 58.5 88 42.0
BolC8t48896H Brassica oleracea HOM05D000768 ORTHO05D000665 3.8e-07 58.5 88 42.0
TWI12G0846 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 3.8e-07 58.5 88 42.0
BcaC05g24783 Brassica carinata HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 43.2
A06p06010 Brassica napus HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 43.2
C05p07280 Brassica napus HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 43.2
BolC5t29486H Brassica oleracea HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 43.2
BraA06t23812Z Brassica rapa HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 43.2
Hma1.2p1_0060F.1_g033260 Hydrangea macrophylla HOM05D000768 ORTHO05D000042 5.0e-07 58.2 41 65.9
Prupe.6G310800 Prunus persica HOM05D000768 ORTHO05D000665 5.0e-07 58.2 88 42.0
MSTRG.27930 Avicennia marina HOM05D000768 ORTHO05D000665 6.6e-07 57.8 88 40.9
Sp6g02050 Schrenkiella parvula HOM05D000768 ORTHO05D000665 6.6e-07 57.8 86 39.5
Lsat_1_v5_gn_5_102281 Lactuca sativa HOM05D000768 ORTHO05D000665 8.6e-07 57.4 88 39.8
Hund21863 Selenicereus undatus HOM05D000768 ORTHO05D000665 8.6e-07 57.4 88 42.0
unitig_62.g23910 Utricularia gibba HOM05D000768 ORTHO05D000665 8.6e-07 57.4 88 37.5
TAR362G0034 Trochodendron aralioides HOM05D000768 ORTHO05D000665 1.1e-06 57.0 35 80.0
unitig_37.g12405 Utricularia gibba HOM05D000768 ORTHO05D000665 1.5e-06 56.6 85 40.0
Nitab4.5_0000155g0140 Nicotiana tabacum HOM05D000768 ORTHO05D000665 3.3e-06 55.5 36 75.0
TPR.G23892 Trifolium pratense HOM05D000768 ORTHO05D000665 3.3e-06 55.5 88 37.5
AL8G22930 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 4.2e-06 55.1 97 37.1
Carub.0008s0915 Capsella rubella HOM05D000768 ORTHO05D000665 4.2e-06 55.1 89 38.2
AT5G49305 Arabidopsis thaliana HOM05D000768 ORTHO05D000665 5.5e-06 54.7 88 38.6
FAN09G3790 Fragaria x ananassa HOM05D000768 ORTHO05D000665 5.5e-06 54.7 35 68.6
TAR633G2566 Trochodendron aralioides HOM05D000768 ORTHO05D000665 5.5e-06 54.7 35 74.3
Actinidia16872 Actinidia chinensis HOM05D000768 ORTHO05D000665 7.2e-06 54.3 35 74.3
AL6G51020 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 7.2e-06 54.3 86 38.4
CDE08G1438 Ceratophyllum demersum HOM05D000768 ORTHO05D000665 7.2e-06 54.3 88 38.6
Duzib212G0362 Durio zibethinus HOM05D000768 ORTHO05D000665 7.2e-06 54.3 88 37.5
HPP92_011865 Vanilla planifolia HOM05D000768 ORTHO05D000665 7.2e-06 54.3 88 37.5
TWI36G0318 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 9.5e-06 53.9 88 37.5


User provided reference genes

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