Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.1e-92 343.2 162 100.0
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.0e-90 336.7 160 98.1
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.8e-88 328.6 159 96.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.6e-86 322.0 160 93.1
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.7e-85 319.3 160 91.9
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.7e-85 319.3 160 91.9
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 9.3e-84 313.5 160 89.4
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 3.9e-82 308.1 160 89.4
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.9e-81 305.8 160 86.2
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.3e-81 305.1 160 86.9
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 5.6e-81 304.3 159 86.2
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 9.6e-81 303.5 160 86.9
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.3e-80 303.1 159 85.5
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.3e-80 303.1 160 86.9
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.3e-80 303.1 160 86.9
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.6e-80 302.8 160 85.6
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.6e-80 302.8 160 85.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 2.8e-80 302.0 159 85.5
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.6e-80 301.6 159 86.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.1e-79 300.1 159 85.5
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.4e-79 298.9 159 85.5
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 5.3e-79 297.7 160 84.4
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.2e-78 296.6 160 85.0
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.0e-78 295.8 159 84.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.8e-78 294.3 160 84.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.8e-78 294.3 159 83.0
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 5.8e-78 294.3 158 82.3
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.8e-78 294.3 160 84.4
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 5.8e-78 294.3 160 83.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.3e-77 293.1 161 83.2
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.7e-77 292.7 159 84.3
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.2e-77 292.4 159 84.3
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.9e-77 292.0 160 82.5
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.9e-77 292.0 159 82.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 4.9e-77 291.2 159 80.5
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 6.4e-77 290.8 159 84.3
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.4e-77 290.8 159 81.8
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-76 290.0 159 81.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.4e-76 289.7 159 82.4
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.9e-76 289.3 160 81.9
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.4e-76 288.9 159 80.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.2e-76 288.5 160 80.6
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 3.2e-76 288.5 160 80.6
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 7.1e-76 287.3 160 79.4
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 7.1e-76 287.3 160 81.9
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.3e-76 287.0 158 82.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.2e-75 286.6 159 79.9
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.6e-75 286.2 160 81.9
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.7e-75 285.4 159 79.9
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.6e-75 284.6 160 81.2
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.0e-75 284.3 160 78.8
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.9e-75 283.9 159 78.6
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.0e-74 283.5 160 80.6
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.0e-74 283.5 159 78.6
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.3e-74 283.1 159 81.1
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.7e-74 282.7 160 80.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.7e-74 282.7 158 77.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.3e-74 282.3 158 81.6
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 3.0e-74 282.0 158 81.0
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 3.9e-74 281.6 158 81.0
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 3.9e-74 281.6 158 81.0
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 3.9e-74 281.6 159 79.9
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 6.6e-74 280.8 158 80.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.9e-73 279.3 156 80.1
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.5e-73 278.9 158 81.0
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.3e-73 278.5 149 83.2
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 4.3e-73 278.1 158 79.7
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.3e-73 278.1 160 78.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 5.6e-73 277.7 158 79.7
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 5.6e-73 277.7 158 79.1
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 9.6e-73 276.9 158 79.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 9.6e-73 276.9 158 79.1
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.3e-72 276.6 158 78.5
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.8e-72 275.4 158 79.1
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 4.8e-72 274.6 155 79.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.1e-71 273.5 146 83.6
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-71 273.1 158 78.5
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.4e-71 272.3 159 73.6
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.1e-71 271.9 173 74.0
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.3e-71 271.2 174 73.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 6.9e-71 270.8 160 78.8
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 6.9e-71 270.8 143 83.9
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.2e-70 270.0 158 76.6
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 4.5e-70 268.1 139 85.6
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 7.6e-70 267.3 152 79.6
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 9.9e-70 266.9 159 74.8
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.2e-69 265.8 159 74.2
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-69 265.4 159 79.2
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.9e-69 265.4 159 74.8
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.8e-69 265.0 149 79.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 6.4e-69 264.2 174 71.3
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.1e-68 263.5 160 76.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 6.0e-67 257.7 159 71.1
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 6.0e-67 257.7 159 72.3
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.0e-67 257.7 148 79.1
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 7.9e-67 257.3 141 82.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.3e-66 255.8 159 69.8
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.3e-66 255.8 159 70.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.7e-66 253.8 139 85.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 8.7e-66 253.8 141 80.9
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.5e-65 252.3 141 80.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.3e-65 251.9 150 78.0
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.6e-65 250.4 159 69.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.6e-65 250.4 159 69.8
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.6e-65 250.4 159 69.8
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.3e-64 250.0 180 66.7
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.3e-64 250.0 151 75.5
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-64 249.6 159 69.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.1e-64 249.2 141 79.4
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.8e-64 248.8 141 79.4
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.8e-64 248.1 142 78.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 9.0e-63 243.8 139 77.7
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 7.6e-62 240.7 139 75.5
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.8e-61 238.4 159 67.3
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 3.8e-61 238.4 135 82.2
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-60 236.1 157 70.7
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.1e-60 234.2 177 63.8
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 3.5e-59 231.9 131 80.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.9e-59 230.7 168 66.1
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.7e-58 227.6 139 70.5
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.8e-56 222.2 160 63.1
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.2e-56 220.7 110 94.5
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 8.4e-53 210.7 160 65.0
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.1e-52 210.3 138 68.8
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.3e-50 202.6 132 68.9
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.3e-49 198.7 107 85.0
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.3e-49 198.7 107 85.0
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.3e-49 198.7 107 85.0
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.6e-48 196.4 134 71.6
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.7e-48 195.3 160 57.5
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 6.3e-48 194.5 171 53.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 8.2e-48 194.1 129 67.4
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.2e-48 194.1 106 84.0
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.4e-47 193.4 129 66.7
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.9e-45 185.7 168 53.6
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 9.4e-44 180.6 103 78.6
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-43 180.3 159 58.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.6e-43 178.3 99 81.8
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.9e-42 175.3 106 69.8
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 8.8e-42 174.1 86 89.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 2.0e-41 172.9 149 61.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 5.9e-38 161.4 160 53.8
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 6.5e-37 157.9 157 45.9
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.2e-36 155.6 87 81.6
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 7.4e-33 144.4 159 50.9
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 4.8e-32 141.7 80 78.8
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.5e-30 135.6 81 76.5
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 5.5e-28 128.3 87 74.7
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.6e-27 126.7 61 90.2
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.6e-27 126.7 166 44.0
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 5.7e-25 118.2 53 98.1
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.7e-22 109.4 142 45.1
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 8.8e-18 94.4 47 85.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-14 84.0 58 63.8
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.2e-13 79.7 44 75.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.2e-12 75.9 45 77.8
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 7.2e-12 74.7 42 73.8
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 8.0e-11 71.2 41 73.2
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 1.0e-10 70.9 48 68.8
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-10 70.9 41 78.0
DCAR_027769 Daucus carota HOM05D003744 ORTHO05D004327 4.5e-06 55.5 71 47.9


User provided reference genes

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