Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 9.9e-112 406.8 199 100.0
Medtr5g044020 Medicago truncatula HOM05D006996 ORTHO05D048925 1.8e-20 103.6 125 52.0
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.3e-15 87.4 41 95.1
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.3e-15 87.4 41 95.1
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.3e-15 87.4 41 95.1
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 5.0e-15 85.5 40 95.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 3.3e-14 82.8 40 90.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 7.3e-14 81.6 40 87.5
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 7.3e-14 81.6 40 87.5
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 4.7e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 4.7e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 4.7e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 4.7e-13 79.0 41 85.4
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 2.3e-12 76.6 40 85.0
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 1.5e-11 73.9 41 80.5
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 3.4e-11 72.8 41 80.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 3.4e-11 72.8 41 82.9
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 5.8e-11 72.0 41 82.9
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 5.8e-11 72.0 41 78.0
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 7.5e-11 71.6 45 75.6
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 9.8e-11 71.2 41 80.5
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 1.3e-10 70.9 41 78.0
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.2e-10 70.1 41 78.0
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 2.2e-10 70.1 41 73.2
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.2e-10 70.1 41 75.6
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.9e-10 69.7 46 67.4
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 2.9e-10 69.7 41 78.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 2.9e-10 69.7 41 78.0
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.9e-10 69.7 41 78.0
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 3.7e-10 69.3 41 75.6
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.7e-10 69.3 41 75.6
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.7e-10 69.3 41 75.6
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 3.7e-10 69.3 41 75.6
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 4.9e-10 68.9 41 75.6
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.3e-10 68.2 40 75.0
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 8.3e-10 68.2 38 78.9
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.3e-10 68.2 41 73.2
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.3e-10 68.2 41 73.2
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 8.3e-10 68.2 41 73.2
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.1e-09 67.8 41 73.2
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.1e-09 67.8 41 73.2
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.1e-09 67.8 41 73.2
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.4e-09 67.4 41 70.7
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.9e-09 67.0 40 72.5
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 2.4e-09 66.6 38 76.3
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 5.4e-09 65.5 40 72.5
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 5.4e-09 65.5 41 70.7
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 7.0e-09 65.1 44 65.9
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 9.2e-09 64.7 37 75.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.2e-08 64.3 40 70.0
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.2e-08 64.3 41 68.3
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.2e-08 64.3 41 68.3
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.6e-08 63.9 41 68.3
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.6e-08 63.9 46 63.0
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.7e-08 63.2 40 70.0
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 2.7e-08 63.2 41 73.2
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 3.5e-08 62.8 37 75.7
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 3.5e-08 62.8 41 73.2
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 3.5e-08 62.8 38 71.1
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 4.6e-08 62.4 41 73.2
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 4.6e-08 62.4 38 71.1
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 6.0e-08 62.0 40 70.0
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 7.8e-08 61.6 41 70.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 1.0e-07 61.2 41 68.3
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 1.0e-07 61.2 38 68.4
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 1.0e-07 61.2 36 72.2
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.3e-07 60.8 37 70.3
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.3e-07 60.8 38 71.1
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.3e-07 60.8 41 68.3
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.3e-07 60.8 41 70.7
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.3e-07 60.8 38 71.1
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.7e-07 60.5 36 72.2
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.3e-07 60.1 36 69.4
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 3.0e-07 59.7 41 68.3
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 3.9e-07 59.3 42 61.9
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 5.0e-07 58.9 35 74.3
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 6.6e-07 58.5 41 65.9
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 6.6e-07 58.5 41 68.3
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 8.6e-07 58.2 41 68.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.1e-06 57.8 36 66.7
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.5e-06 57.4 36 69.4
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 1.5e-06 57.4 37 64.9
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.5e-06 57.4 35 71.4
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.5e-06 57.4 37 67.6
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.5e-06 56.6 41 63.4
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.5e-06 56.6 41 70.7
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 3.3e-06 56.2 36 66.7
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.3e-06 56.2 41 68.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 7.3e-06 55.1 37 59.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 7.3e-06 55.1 37 64.9
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 7.3e-06 55.1 37 64.9
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 7.3e-06 55.1 75 42.7


User provided reference genes

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